Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR34B-201ENST00000385076 84 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AP002784.2-201ENST00000397300 549 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 SSXP10-201ENST00000402595 565 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RPS3AP25-201ENST00000411660 793 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RAB11AP1-201ENST00000442978 646 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 HSFY3P-201ENST00000444242 1191 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 PDSS1P2-201ENST00000449397 678 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AL096803.2-201ENST00000450032 677 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 OR9M1P-201ENST00000459641 921 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC078857.1-201ENST00000469870 667 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RPS4XP6-201ENST00000477670 797 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RNF138P1-201ENST00000502765 546 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC110768.1-201ENST00000509222 400 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC005798.1-201ENST00000513715 387 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RNA5SP179-201ENST00000517284 121 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 CYCSP30-201ENST00000546447 172 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AGGF1P8-201ENST00000562979 1000 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 CYP4A43P-201ENST00000568156 121 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC007687.1-201ENST00000602704 304 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC021851.1-201ENST00000608537 1082 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC106730.3-201ENST00000624568 641 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AL034408.1-202ENST00000636088 415 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 AL157700.1-201ENST00000561973 1432 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.77
HDDC3Q8N4P3 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.03□□□□□ -1.77
HDDC3Q8N4P3 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
HDDC3Q8N4P3 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC025263.3-201ENST00000622965 1396 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 SNORA73.2-201ENST00000364946 201 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 RNU6-609P-201ENST00000365459 107 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 UBE2V1P9-201ENST00000414760 368 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC004552.1-201ENST00000419089 348 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC006994.1-201ENST00000438212 839 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC074367.1-201ENST00000438685 1125 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 RPS26P3-201ENST00000470205 348 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 TMED11P-201ENST00000479478 690 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC090543.2-201ENST00000483963 348 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC004057.1-201ENST00000485827 348 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC006499.5-201ENST00000505037 514 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC027338.1-201ENST00000514840 825 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC026403.1-201ENST00000518938 295 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC124293.1-201ENST00000530034 493 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC069240.1-201ENST00000548774 375 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 OR4G1P-201ENST00000588632 938 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC008638.3-201ENST00000603341 463 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC091167.4-201ENST00000605079 184 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AL391497.1-201ENST00000608671 547 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC096577.2-201ENST00000611455 153 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC024560.2-201ENST00000507981 1497 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 AC024341.1-201ENST00000526444 1552 ntBASIC4.02□□□□□ -1.77
HDDC3Q8N4P3 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms