Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 SNORD39.3-201ENST00000584451 71 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.34□□□□□ -1.71
PRPF39Q86UA1 AC069431.2-201ENST00000604149 1099 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 AC025588.3-201ENST00000604182 274 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 PART1_2.1-201ENST00000612397 250 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 MIR8059-201ENST00000620427 81 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.34□□□□□ -1.71
PRPF39Q86UA1 MIR492-201ENST00000638676 116 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 AL645568.2-201ENST00000432815 1337 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PRPF39Q86UA1 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PRPF39Q86UA1 AC117529.2-201ENST00000512159 2068 ntBASIC4.34□□□□□ -1.71
PRPF39Q86UA1 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
PRPF39Q86UA1 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
PRPF39Q86UA1 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
PRPF39Q86UA1 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
PRPF39Q86UA1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 LARP1BP1-201ENST00000506036 1359 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RNA5SP388-201ENST00000362584 119 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RNU6-492P-201ENST00000363035 104 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 MIR122-201ENST00000385044 85 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RSL24D1P1-201ENST00000404972 493 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RN7SKP235-201ENST00000410662 305 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 MTCYBP24-201ENST00000420387 1106 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 MTCO3P1-205ENST00000422088 832 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 EIF1P3-201ENST00000423841 334 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC005345.1-201ENST00000431868 217 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 USP9YP7-201ENST00000436723 430 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 USP9YP32-201ENST00000452432 430 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RPS20P32-201ENST00000456044 356 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 HMGB3P30-201ENST00000457863 606 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 snoU109.3-201ENST00000459477 145 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RPS6P4-201ENST00000494693 758 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC139783.2-201ENST00000504847 1145 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 BOLA3P3-201ENST00000505182 232 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC093824.1-201ENST00000508796 343 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 KCTD9P2-201ENST00000512203 1013 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC026402.1-201ENST00000513642 170 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 RNA5SP73-201ENST00000516744 108 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AL591034.3-201ENST00000605511 685 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 AC012603.1-201ENST00000606424 528 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 MFSD8-245ENST00000641743 948 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 SAGE4P-201ENST00000442271 3381 ntBASIC4.33□□□□□ -1.72
PRPF39Q86UA1 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PRPF39Q86UA1 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 OR4A15-201ENST00000314706 1035 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 MIR217-201ENST00000384817 110 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 RNU6-628P-201ENST00000410675 107 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 AL161631.1-201ENST00000417933 486 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 BOLA3P4-201ENST00000418151 400 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 RPS12P5-201ENST00000423449 371 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 RBMY1KP-201ENST00000423480 476 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 OSTCP5-201ENST00000425293 453 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 Z93242.1-201ENST00000427102 353 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 RPS6P12-201ENST00000432491 726 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 AL356276.2-201ENST00000435919 558 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 FGF7P3-201ENST00000454645 303 ntBASIC4.32□□□□□ -1.72
PRPF39Q86UA1 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.32□□□□□ -1.72
PRPF39Q86UA1 RNA5SP49-201ENST00000516450 115 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms