Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 RNU6-405P-201ENST00000516637 110 ntBASIC5.56□□□□□ -1.52
MRE11P49959 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.56□□□□□ -1.52
MRE11P49959 AC012339.2-201ENST00000523996 453 ntBASIC5.56□□□□□ -1.52
MRE11P49959 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.56□□□□□ -1.52
MRE11P49959 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.56□□□□□ -1.52
MRE11P49959 OR4K7P-201ENST00000580232 945 ntBASIC5.56□□□□□ -1.52
MRE11P49959 ABBA01006766.1-201ENST00000584728 294 ntBASIC5.56□□□□□ -1.52
MRE11P49959 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.56□□□□□ -1.52
MRE11P49959 AC069307.1-201ENST00000602820 447 ntBASIC5.56□□□□□ -1.52
MRE11P49959 AC083899.3-201ENST00000603413 594 ntBASIC5.56□□□□□ -1.52
MRE11P49959 MTCYBP22-201ENST00000603788 447 ntBASIC5.56□□□□□ -1.52
MRE11P49959 AC069209.1-201ENST00000619282 651 ntBASIC5.56□□□□□ -1.52
MRE11P49959 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MRE11P49959 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MRE11P49959 AL353743.4-201ENST00000422653 1547 ntBASIC5.56□□□□□ -1.52
MRE11P49959 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.56□□□□□ -1.52
MRE11P49959 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MRE11P49959 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
MRE11P49959 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.56□□□□□ -1.52
MRE11P49959 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MRE11P49959 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 AC109315.1-201ENST00000584143 1347 ntBASIC5.55□□□□□ -1.52
MRE11P49959 RNU1-64P-201ENST00000365443 163 ntBASIC5.55□□□□□ -1.52
MRE11P49959 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 RNU6-185P-201ENST00000384421 107 ntBASIC5.55□□□□□ -1.52
MRE11P49959 RN7SKP126-201ENST00000411143 300 ntBASIC5.55□□□□□ -1.52
MRE11P49959 RPS15AP38-201ENST00000413110 372 ntBASIC5.55□□□□□ -1.52
MRE11P49959 MTCYBP38-201ENST00000417160 1123 ntBASIC5.55□□□□□ -1.52
MRE11P49959 Z74021.1-201ENST00000423610 407 ntBASIC5.55□□□□□ -1.52
MRE11P49959 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 AC022022.1-201ENST00000430304 178 ntBASIC5.55□□□□□ -1.52
MRE11P49959 CDY14P-201ENST00000431260 1014 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 AL353748.1-201ENST00000440753 474 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC009263.1-201ENST00000441193 1239 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.55□□□□□ -1.52
MRE11P49959 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MRE11P49959 CDY23P-201ENST00000451661 1014 ntBASIC5.55□□□□□ -1.52
MRE11P49959 DNAJC19P8-201ENST00000452887 259 ntBASIC5.55□□□□□ -1.52
MRE11P49959 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.55□□□□□ -1.52
MRE11P49959 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 TPT1P7-201ENST00000458300 517 ntBASIC5.55□□□□□ -1.52
MRE11P49959 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
MRE11P49959 AC073522.1-201ENST00000483312 377 ntBASIC5.55□□□□□ -1.52
MRE11P49959 NIP7P2-201ENST00000485801 544 ntBASIC5.55□□□□□ -1.52
MRE11P49959 MTAPP1-201ENST00000489154 819 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC108022.1-201ENST00000493466 478 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 GTF2F2P1-201ENST00000511083 675 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC008549.1-201ENST00000512900 643 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 AC087808.1-201ENST00000520501 361 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC087883.1-201ENST00000551882 391 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AL109766.1-201ENST00000555080 552 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 AC068135.2-201ENST00000569293 1028 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.55□□□□□ -1.52
MRE11P49959 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 AC126118.1-201ENST00000607744 628 ntBASIC5.55□□□□□ -1.52
MRE11P49959 AC034229.5-201ENST00000624258 185 ntBASIC5.55□□□□□ -1.52
MRE11P49959 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.55□□□□□ -1.52
MRE11P49959 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.55□□□□□ -1.52
MRE11P49959 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.55□□□□□ -1.52
MRE11P49959 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MRE11P49959 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MRE11P49959 GTF2H2B-203ENST00000508065 1432 ntBASIC5.55□□□□□ -1.52
MRE11P49959 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
MRE11P49959 AL445437.1-201ENST00000623157 3087 ntBASIC5.54□□□□□ -1.52
MRE11P49959 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
MRE11P49959 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.54□□□□□ -1.52
MRE11P49959 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 RNU6-1339P-201ENST00000363574 91 ntBASIC5.54□□□□□ -1.52
MRE11P49959 RNU6-621P-201ENST00000364752 109 ntBASIC5.54□□□□□ -1.52
MRE11P49959 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
MRE11P49959 SNORA75-201ENST00000384158 137 ntBASIC5.54□□□□□ -1.52
MRE11P49959 RNU6-178P-201ENST00000384631 104 ntBASIC5.54□□□□□ -1.52
MRE11P49959 MIR93-201ENST00000385024 80 ntBASIC5.54□□□□□ -1.52
MRE11P49959 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MRE11P49959 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 ZNF603P-201ENST00000405613 487 ntBASIC5.54□□□□□ -1.52
MRE11P49959 AL512430.2-201ENST00000406786 339 ntBASIC5.54□□□□□ -1.52
MRE11P49959 SNORA77-201ENST00000408716 125 ntBASIC5.54□□□□□ -1.52
MRE11P49959 ATG4AP1-201ENST00000416893 538 ntBASIC5.54□□□□□ -1.52
MRE11P49959 CYCSP46-201ENST00000423569 204 ntBASIC5.54□□□□□ -1.52
MRE11P49959 AC093655.2-201ENST00000425735 631 ntBASIC5.54□□□□□ -1.52
MRE11P49959 DPY19L1P2-201ENST00000426647 915 ntBASIC5.54□□□□□ -1.52
MRE11P49959 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MRE11P49959 AC241584.1-201ENST00000438469 1241 ntBASIC5.54□□□□□ -1.52
MRE11P49959 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms