Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC016877.3-201ENST00000606778 504 ntBASIC3.81□□□□□ -1.8
SOX3P41225 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 MIR7151-201ENST00000617477 60 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SOX3P41225 AL157770.1-201ENST00000623049 439 ntBASIC3.81□□□□□ -1.8
SOX3P41225 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX3P41225 AC090897.3-201ENST00000636973 1157 ntBASIC3.81□□□□□ -1.8
SOX3P41225 ZNF663P-202ENST00000641770 1131 ntBASIC3.81□□□□□ -1.8
SOX3P41225 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX3P41225 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 MTND4P10-201ENST00000446199 1363 ntBASIC3.8□□□□□ -1.8
SOX3P41225 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SOX3P41225 AC011155.1-201ENST00000316512 456 ntBASIC3.8□□□□□ -1.8
SOX3P41225 RNA5SP502-201ENST00000362694 119 ntBASIC3.8□□□□□ -1.8
SOX3P41225 RNU6-707P-201ENST00000364647 95 ntBASIC3.8□□□□□ -1.8
SOX3P41225 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 RNU6-146P-201ENST00000384602 108 ntBASIC3.8□□□□□ -1.8
SOX3P41225 RNU6-1151P-201ENST00000384684 107 ntBASIC3.8□□□□□ -1.8
SOX3P41225 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SOX3P41225 SNORA40.2-201ENST00000390847 128 ntBASIC3.8□□□□□ -1.8
SOX3P41225 GSTA8P-201ENST00000404253 637 ntBASIC3.8□□□□□ -1.8
SOX3P41225 RPL31P52-201ENST00000407532 367 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AL391219.1-201ENST00000422570 483 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 VDAC1P6-201ENST00000430062 855 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 RPL37P1-201ENST00000432310 284 ntBASIC3.8□□□□□ -1.8
SOX3P41225 RPS20P1-201ENST00000434853 354 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 Z73417.1-201ENST00000447373 778 ntBASIC3.8□□□□□ -1.8
SOX3P41225 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 RPL38P1-201ENST00000460914 211 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AL672167.3-201ENST00000465951 960 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AL132838.2-201ENST00000492041 314 ntBASIC3.8□□□□□ -1.8
SOX3P41225 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 AC093824.1-201ENST00000508796 343 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC113347.3-201ENST00000509113 148 ntBASIC3.8□□□□□ -1.8
SOX3P41225 EEF1A1P37-201ENST00000522748 715 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AF279873.1-201ENST00000523393 313 ntBASIC3.8□□□□□ -1.8
SOX3P41225 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 AC107016.1-201ENST00000550463 337 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC084824.1-201ENST00000550917 1005 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 AGGF1P6-201ENST00000569213 976 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX3P41225 VN1R83P-201ENST00000595685 445 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC020914.4-201ENST00000597690 277 ntBASIC3.8□□□□□ -1.8
SOX3P41225 VN1R85P-201ENST00000601587 426 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC234772.3-201ENST00000602277 528 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AC091488.1-201ENST00000604239 660 ntBASIC3.8□□□□□ -1.8
SOX3P41225 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 AC009318.3-201ENST00000616916 503 ntBASIC3.8□□□□□ -1.8
SOX3P41225 AL158163.2-201ENST00000619110 700 ntBASIC3.8□□□□□ -1.8
SOX3P41225 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 MIR7702-201ENST00000621931 59 ntBASIC3.8□□□□□ -1.8
SOX3P41225 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX3P41225 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SOX3P41225 AC012020.1-201ENST00000624541 1728 ntBASIC3.8□□□□□ -1.8
SOX3P41225 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 RLIMP1-201ENST00000339626 1680 ntBASIC3.8□□□□□ -1.8
SOX3P41225 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SOX3P41225 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX3P41225 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 AC027287.1-201ENST00000553115 1453 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC074029.4-201ENST00000624796 1859 ntBASIC3.79□□□□□ -1.8
SOX3P41225 NOL8P1-201ENST00000508336 3529 ntBASIC3.79□□□□□ -1.8
SOX3P41225 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.79□□□□□ -1.8
SOX3P41225 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SOX3P41225 RNU6-984P-201ENST00000363236 109 ntBASIC3.79□□□□□ -1.8
SOX3P41225 RNU4-92P-201ENST00000363783 136 ntBASIC3.79□□□□□ -1.8
SOX3P41225 snoZ40.1-201ENST00000364540 72 ntBASIC3.79□□□□□ -1.8
SOX3P41225 RNA5SP283-201ENST00000365604 119 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.79□□□□□ -1.8
SOX3P41225 RPL23AP48-201ENST00000406913 488 ntBASIC3.79□□□□□ -1.8
SOX3P41225 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 RNU6-628P-201ENST00000410675 107 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 TPT1P2-201ENST00000413105 503 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms