Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BDNFP23560 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.6□□□□□ -1.67
BDNFP23560 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BDNFP23560 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
BDNFP23560 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 OTUD4P1-201ENST00000237841 3067 ntBASIC4.59□□□□□ -1.67
BDNFP23560 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 RNA5SP295-201ENST00000362655 121 ntBASIC4.59□□□□□ -1.67
BDNFP23560 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 Y_RNA.578-201ENST00000390903 88 ntBASIC4.59□□□□□ -1.67
BDNFP23560 RNU2-28P-201ENST00000410457 189 ntBASIC4.59□□□□□ -1.67
BDNFP23560 AC009237.10-201ENST00000414112 510 ntBASIC4.59□□□□□ -1.67
BDNFP23560 MFSD13B-201ENST00000420133 1290 ntBASIC4.59□□□□□ -1.67
BDNFP23560 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.59□□□□□ -1.67
BDNFP23560 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.59□□□□□ -1.67
BDNFP23560 MTCO1P54-201ENST00000430139 712 ntBASIC4.59□□□□□ -1.67
BDNFP23560 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 KCTD10P1-201ENST00000434203 625 ntBASIC4.59□□□□□ -1.67
BDNFP23560 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 RPL23AP62-201ENST00000463396 453 ntBASIC4.59□□□□□ -1.67
BDNFP23560 PLGLA-201ENST00000465668 449 ntBASIC4.59□□□□□ -1.67
BDNFP23560 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
BDNFP23560 UQCRHP4-201ENST00000471686 272 ntBASIC4.59□□□□□ -1.67
BDNFP23560 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.59□□□□□ -1.67
BDNFP23560 AC069528.1-202ENST00000482888 637 ntBASIC4.59□□□□□ -1.67
BDNFP23560 AC108078.3-201ENST00000502633 489 ntBASIC4.59□□□□□ -1.67
BDNFP23560 SNORA31.9-201ENST00000516429 84 ntBASIC4.59□□□□□ -1.67
BDNFP23560 RNA5SP468-201ENST00000516782 93 ntBASIC4.59□□□□□ -1.67
BDNFP23560 SNORA48.10-201ENST00000516965 160 ntBASIC4.59□□□□□ -1.67
BDNFP23560 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.59□□□□□ -1.67
BDNFP23560 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.59□□□□□ -1.67
BDNFP23560 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.59□□□□□ -1.67
BDNFP23560 AC027287.1-201ENST00000553115 1453 ntBASIC4.59□□□□□ -1.67
BDNFP23560 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.59□□□□□ -1.67
BDNFP23560 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
BDNFP23560 RPL7P50-201ENST00000600588 727 ntBASIC4.59□□□□□ -1.67
BDNFP23560 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
BDNFP23560 VIS1.1-201ENST00000610517 203 ntBASIC4.59□□□□□ -1.67
BDNFP23560 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
BDNFP23560 AC008083.4-201ENST00000615076 444 ntBASIC4.59□□□□□ -1.67
BDNFP23560 AC231759.1-201ENST00000616455 597 ntBASIC4.59□□□□□ -1.67
BDNFP23560 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
BDNFP23560 AC092184.1-201ENST00000625042 715 ntBASIC4.59□□□□□ -1.67
BDNFP23560 MIR3653-201ENST00000625572 110 ntBASIC4.59□□□□□ -1.67
BDNFP23560 AC017104.4-201ENST00000636283 1592 ntBASIC4.59□□□□□ -1.67
BDNFP23560 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.59□□□□□ -1.67
BDNFP23560 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.59□□□□□ -1.68
BDNFP23560 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
BDNFP23560 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.58□□□□□ -1.68
BDNFP23560 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.58□□□□□ -1.68
BDNFP23560 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
BDNFP23560 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
BDNFP23560 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
BDNFP23560 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.58□□□□□ -1.68
BDNFP23560 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
BDNFP23560 RNA5SP175-201ENST00000364275 119 ntBASIC4.58□□□□□ -1.68
BDNFP23560 RNU1-44P-201ENST00000384453 163 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AL079342.2-201ENST00000403367 482 ntBASIC4.58□□□□□ -1.68
BDNFP23560 SNORA74C-2-201ENST00000411179 201 ntBASIC4.58□□□□□ -1.68
BDNFP23560 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.58□□□□□ -1.68
BDNFP23560 MTND4P3-201ENST00000417829 541 ntBASIC4.58□□□□□ -1.68
BDNFP23560 USP9YP21-201ENST00000420603 432 ntBASIC4.58□□□□□ -1.68
BDNFP23560 OR2X1P-201ENST00000421144 687 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.58□□□□□ -1.68
BDNFP23560 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.58□□□□□ -1.68
BDNFP23560 RPL21P133-201ENST00000443666 476 ntBASIC4.58□□□□□ -1.68
BDNFP23560 RPL7P22-201ENST00000466005 733 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC103987.1-201ENST00000473394 348 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC078785.3-201ENST00000476607 425 ntBASIC4.58□□□□□ -1.68
BDNFP23560 DEFB109F-201ENST00000491870 277 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC108022.1-201ENST00000493466 478 ntBASIC4.58□□□□□ -1.68
BDNFP23560 RN7SL691P-201ENST00000494487 301 ntBASIC4.58□□□□□ -1.68
BDNFP23560 HMGB1P22-201ENST00000505315 124 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC108475.1-201ENST00000507880 950 ntBASIC4.58□□□□□ -1.68
BDNFP23560 RNA5SP49-201ENST00000516450 115 ntBASIC4.58□□□□□ -1.68
BDNFP23560 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.58□□□□□ -1.68
BDNFP23560 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.58□□□□□ -1.68
BDNFP23560 AC092747.2-201ENST00000545069 983 ntBASIC4.58□□□□□ -1.68
BDNFP23560 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4.58□□□□□ -1.68
BDNFP23560 AC122134.1-202ENST00000569111 1201 ntBASIC4.58□□□□□ -1.68
BDNFP23560 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.58□□□□□ -1.68
BDNFP23560 MIR4644-201ENST00000579929 84 ntBASIC4.58□□□□□ -1.68
BDNFP23560 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.58□□□□□ -1.68
BDNFP23560 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.58□□□□□ -1.68
BDNFP23560 AL390838.2-201ENST00000602394 274 ntBASIC4.58□□□□□ -1.68
BDNFP23560 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.58□□□□□ -1.68
BDNFP23560 CYP3A51P-201ENST00000633513 256 ntBASIC4.58□□□□□ -1.68
BDNFP23560 MFSD8-245ENST00000641743 948 ntBASIC4.58□□□□□ -1.68
BDNFP23560 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
BDNFP23560 MAPK10-320ENST00000641462 6696 ntBASIC4.58□□□□□ -1.68
BDNFP23560 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BDNFP23560 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
BDNFP23560 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms