Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MTCYBP11-201ENST00000447254 1109 ntBASIC4.11□□□□□ -1.75
MSH3P20585 TPMTP4-201ENST00000450749 678 ntBASIC4.11□□□□□ -1.75
MSH3P20585 USP9YP25-201ENST00000457708 443 ntBASIC4.11□□□□□ -1.75
MSH3P20585 RNA5SP246-201ENST00000458909 119 ntBASIC4.11□□□□□ -1.75
MSH3P20585 RN7SL385P-201ENST00000468873 276 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC004263.1-201ENST00000479327 332 ntBASIC4.11□□□□□ -1.75
MSH3P20585 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 AC118282.2-201ENST00000508739 374 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.11□□□□□ -1.75
MSH3P20585 IGKV2-36-201ENST00000519999 223 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.11□□□□□ -1.75
MSH3P20585 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.11□□□□□ -1.75
MSH3P20585 OR4A2P-201ENST00000527276 913 ntBASIC4.11□□□□□ -1.75
MSH3P20585 DEFB109D-201ENST00000529497 240 ntBASIC4.11□□□□□ -1.75
MSH3P20585 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 PARP1P2-201ENST00000556806 195 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 MIR4716-201ENST00000579628 84 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AP001269.3-201ENST00000588718 329 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.11□□□□□ -1.75
MSH3P20585 AC099676.1-201ENST00000608886 657 ntBASIC4.11□□□□□ -1.75
MSH3P20585 OR6R2P-201ENST00000609216 300 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC064801.1-201ENST00000612025 407 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC024257.5-201ENST00000612739 531 ntBASIC4.11□□□□□ -1.75
MSH3P20585 MIR4727-201ENST00000622232 55 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AP003485.2-201ENST00000623636 610 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC087821.2-201ENST00000637086 450 ntBASIC4.11□□□□□ -1.75
MSH3P20585 MFSD8-245ENST00000641743 948 ntBASIC4.11□□□□□ -1.75
MSH3P20585 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 AC025263.3-201ENST00000622965 1396 ntBASIC4.11□□□□□ -1.75
MSH3P20585 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 AL353743.4-201ENST00000422653 1547 ntBASIC4.11□□□□□ -1.75
MSH3P20585 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSH3P20585 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSH3P20585 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSH3P20585 snoZ40.1-201ENST00000364540 72 ntBASIC4.1□□□□□ -1.75
MSH3P20585 SNORA70C-201ENST00000384538 135 ntBASIC4.1□□□□□ -1.75
MSH3P20585 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
MSH3P20585 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.1□□□□□ -1.75
MSH3P20585 RAB28P1-201ENST00000411517 641 ntBASIC4.1□□□□□ -1.75
MSH3P20585 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSH3P20585 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.1□□□□□ -1.75
MSH3P20585 COX6CP15-201ENST00000426313 211 ntBASIC4.1□□□□□ -1.75
MSH3P20585 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.1□□□□□ -1.75
MSH3P20585 RPL21P110-201ENST00000433345 446 ntBASIC4.1□□□□□ -1.75
MSH3P20585 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSH3P20585 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.1□□□□□ -1.75
MSH3P20585 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 VN1R40P-201ENST00000455196 941 ntBASIC4.1□□□□□ -1.75
MSH3P20585 RPL36AP13-201ENST00000457490 317 ntBASIC4.1□□□□□ -1.75
MSH3P20585 RPL23AP71-201ENST00000470966 469 ntBASIC4.1□□□□□ -1.75
MSH3P20585 RN7SL604P-201ENST00000492589 296 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC084024.2-201ENST00000503480 791 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.1□□□□□ -1.75
MSH3P20585 AC139783.2-201ENST00000504847 1145 ntBASIC4.1□□□□□ -1.75
MSH3P20585 IGBP1P5-201ENST00000507524 1000 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC010285.3-201ENST00000511668 676 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
MSH3P20585 AC084757.1-201ENST00000559987 490 ntBASIC4.1□□□□□ -1.75
MSH3P20585 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AC145350.1-201ENST00000567426 208 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC4.1□□□□□ -1.75
MSH3P20585 AC090312.2-201ENST00000582687 378 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC115085.1-201ENST00000588924 229 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC021749.1-201ENST00000604322 607 ntBASIC4.1□□□□□ -1.75
MSH3P20585 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 AP005137.2-201ENST00000609238 400 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC233309.1-201ENST00000619522 751 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC022079.1-201ENST00000621546 602 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AP003072.4-201ENST00000624580 310 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AP005264.7-201ENST00000625003 745 ntBASIC4.1□□□□□ -1.75
MSH3P20585 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.1□□□□□ -1.75
MSH3P20585 OR52H1-202ENST00000641796 1061 ntBASIC4.1□□□□□ -1.75
MSH3P20585 AC116667.1-201ENST00000604855 2072 ntBASIC4.1□□□□□ -1.75
MSH3P20585 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.1□□□□□ -1.75
MSH3P20585 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.1□□□□□ -1.75
MSH3P20585 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSH3P20585 AL118496.1-201ENST00000440201 1812 ntBASIC4.09□□□□□ -1.75
MSH3P20585 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSH3P20585 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
MSH3P20585 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSH3P20585 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
MSH3P20585 SNORA70.2-201ENST00000364506 135 ntBASIC4.09□□□□□ -1.75
MSH3P20585 RNU6-707P-201ENST00000364647 95 ntBASIC4.09□□□□□ -1.75
MSH3P20585 SNORD116.1-201ENST00000365628 92 ntBASIC4.09□□□□□ -1.75
MSH3P20585 AC068538.1-201ENST00000376856 336 ntBASIC4.09□□□□□ -1.75
MSH3P20585 RNU6-1279P-201ENST00000383917 103 ntBASIC4.09□□□□□ -1.75
MSH3P20585 RNU6-413P-201ENST00000384115 107 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms