Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL109659.3-201ENST00000624985 950 ntBASIC3.57□□□□□ -1.84
SDC1P18827 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.56□□□□□ -1.84
SDC1P18827 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 AC025263.3-201ENST00000622965 1396 ntBASIC3.56□□□□□ -1.84
SDC1P18827 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.56□□□□□ -1.84
SDC1P18827 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SDC1P18827 RNA5SP424-201ENST00000390988 115 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AL603865.2-201ENST00000401679 213 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AL049693.1-201ENST00000402760 611 ntBASIC3.56□□□□□ -1.84
SDC1P18827 RNU2-21P-201ENST00000410368 188 ntBASIC3.56□□□□□ -1.84
SDC1P18827 RNU6-272P-201ENST00000411028 104 ntBASIC3.56□□□□□ -1.84
SDC1P18827 PAICSP7-201ENST00000419829 962 ntBASIC3.56□□□□□ -1.84
SDC1P18827 OR8F1P-201ENST00000425243 930 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 AC012497.1-201ENST00000429392 575 ntBASIC3.56□□□□□ -1.84
SDC1P18827 YWHAZP8-201ENST00000436935 731 ntBASIC3.56□□□□□ -1.84
SDC1P18827 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.56□□□□□ -1.84
SDC1P18827 ARF4P4-201ENST00000439608 520 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC002542.1-201ENST00000440683 193 ntBASIC3.56□□□□□ -1.84
SDC1P18827 RAB11AP1-201ENST00000442978 646 ntBASIC3.56□□□□□ -1.84
SDC1P18827 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 NDUFA5P9-201ENST00000472609 340 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC091959.2-201ENST00000477363 321 ntBASIC3.56□□□□□ -1.84
SDC1P18827 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.56□□□□□ -1.84
SDC1P18827 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 IGKV2D-23-201ENST00000518179 286 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 AC004217.3-201ENST00000551552 878 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.56□□□□□ -1.84
SDC1P18827 NIFKP8-201ENST00000560500 874 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC006960.3-201ENST00000561845 705 ntBASIC3.56□□□□□ -1.84
SDC1P18827 CYP2C60P-201ENST00000566088 139 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.56□□□□□ -1.84
SDC1P18827 KLKP1-201ENST00000595979 403 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AL606490.9-201ENST00000603331 271 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC010680.3-201ENST00000604215 520 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC009948.4-201ENST00000604692 675 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC112503.1-201ENST00000608436 391 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC124016.2-201ENST00000610058 665 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC006338.2-201ENST00000616864 791 ntBASIC3.56□□□□□ -1.84
SDC1P18827 MIR6864-201ENST00000617935 70 ntBASIC3.56□□□□□ -1.84
SDC1P18827 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 AL049777.1-201ENST00000622740 518 ntBASIC3.56□□□□□ -1.84
SDC1P18827 FP236240.3-201ENST00000623061 327 ntBASIC3.56□□□□□ -1.84
SDC1P18827 AC126544.2-201ENST00000625174 749 ntBASIC3.56□□□□□ -1.84
SDC1P18827 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.56□□□□□ -1.84
SDC1P18827 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.56□□□□□ -1.84
SDC1P18827 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.56□□□□□ -1.84
SDC1P18827 AC139713.2-210ENST00000641741 992 ntBASIC3.56□□□□□ -1.84
SDC1P18827 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.56□□□□□ -1.84
SDC1P18827 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
SDC1P18827 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
SDC1P18827 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 RN7SKP44-201ENST00000363602 316 ntBASIC3.55□□□□□ -1.84
SDC1P18827 RNU6-283P-201ENST00000364788 107 ntBASIC3.55□□□□□ -1.84
SDC1P18827 SNORA62-201ENST00000365493 153 ntBASIC3.55□□□□□ -1.84
SDC1P18827 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SDC1P18827 AL391417.1-201ENST00000404100 426 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AC004987.3-201ENST00000413879 771 ntBASIC3.55□□□□□ -1.84
SDC1P18827 HMGB3P20-201ENST00000417997 600 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.55□□□□□ -1.84
SDC1P18827 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 RPL21P89-201ENST00000444021 467 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.55□□□□□ -1.84
SDC1P18827 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 RN7SL323P-201ENST00000494712 295 ntBASIC3.55□□□□□ -1.84
SDC1P18827 HMGB1P21-201ENST00000502313 581 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AC026414.1-201ENST00000504046 698 ntBASIC3.55□□□□□ -1.84
SDC1P18827 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
SDC1P18827 AC069306.1-201ENST00000507006 843 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms