Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 VTI1BP4-201ENST00000427516 527 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 TMEM183AP1-205ENST00000432739 290 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC006335.2-201ENST00000437993 330 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 CYCSP51-201ENST00000443545 318 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 PRPF38AP1-201ENST00000451976 933 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 MTND6P2-201ENST00000512226 524 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL109766.1-201ENST00000555080 552 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC018552.1-201ENST00000562099 811 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 MRPS21P7-201ENST00000566937 238 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 MTCO3P13-201ENST00000577757 781 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 MIR3167-201ENST00000579623 85 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 MIR4311-201ENST00000580794 100 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC018638.8-201ENST00000588755 281 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AP001429.1-201ENST00000602568 530 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC121334.2-201ENST00000605387 271 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AC093388.1-201ENST00000609166 430 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 PART1_1.1-201ENST00000611761 217 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 AL158801.5-201ENST00000623123 465 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD1Q96NR3 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC092125.1-201ENST00000562568 1995 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 SNORA63-201ENST00000363450 132 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 RNU1-136P-201ENST00000384181 164 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 MIR323B-201ENST00000385269 82 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC096921.1-201ENST00000411661 375 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 USP9YP20-201ENST00000419224 558 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 SLC35E1P1-201ENST00000419313 864 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 CHEK2P5-201ENST00000423877 246 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 RPL36P19-201ENST00000430744 301 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 BX842559.2-201ENST00000451418 605 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 RPS4XP18-201ENST00000495480 763 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL136038.1-201ENST00000497246 351 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC117522.3-201ENST00000507974 584 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC018797.3-201ENST00000513388 1241 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 RPS27AP18-201ENST00000515536 459 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 RNU6-835P-201ENST00000516974 104 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 IGLV3-24-201ENST00000517477 197 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 PHBP17-201ENST00000528576 541 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC087477.6-201ENST00000559595 843 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AC104695.2-201ENST00000605056 775 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 AL445222.1-201ENST00000607259 628 ntBASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD1Q96NR3 MIR6729-201ENST00000618194 65 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms