Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL158156.1-201ENST00000422509 473 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC084357.1-201ENST00000473404 255 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC113192.3-201ENST00000529152 742 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AP000916.1-201ENST00000533869 835 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 NMD3P1-201ENST00000439704 1488 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL356274.2-201ENST00000624379 3752 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC093755.1-201ENST00000512950 1023 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 MIR3186-201ENST00000577404 85 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 MIR4276-201ENST00000584832 70 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 Z82195.1-201ENST00000604558 398 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC138393.1-206ENST00000540997 1886 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 MAPK10-362ENST00000641864 4484 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 SNORD74.4-201ENST00000364129 80 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RNA5SP31-201ENST00000411144 127 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL024507.1-201ENST00000412741 274 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC069540.1-201ENST00000446320 988 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 MTND6P32-201ENST00000457611 483 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC025125.1-201ENST00000624743 1922 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 SNORA79B-201ENST00000410557 148 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 FDX1P2-201ENST00000450769 375 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RPL7P48-201ENST00000461513 746 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC117440.1-201ENST00000474107 571 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC069209.1-201ENST00000619282 651 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ASNSP3-201ENST00000451989 1306 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC093010.3-201ENST00000570269 15214 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RNA5SP197-201ENST00000363357 119 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC087650.1-201ENST00000431445 468 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 HMGB3P22-202ENST00000451823 572 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RN7SL594P-201ENST00000470590 287 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 Vault.1-201ENST00000516474 102 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RPS4XP8-201ENST00000402039 771 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RN7SKP53-201ENST00000411337 315 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC003685.2-201ENST00000422795 395 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RPS20P32-201ENST00000456044 356 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC243654.2-201ENST00000612843 443 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL773545.4-201ENST00000637262 310 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL513478.4-201ENST00000641636 310 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL592437.2-201ENST00000421655 2434 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RNA5SP229-201ENST00000410809 99 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 BTF3P9-201ENST00000418784 283 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RPL32P34-201ENST00000486380 400 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC112184.1-201ENST00000505179 312 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC027176.1-201ENST00000560204 514 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 MIR7851-201ENST00000610611 160 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
SYNE1Q8NF91 DDX6P1-205ENST00000441966 1436 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AL513477.1-202ENST00000417061 214 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 AC106901.1-201ENST00000425086 698 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 ISCA1P6-201ENST00000427740 390 ntBASIC1.01□□□□□ -2.25
SYNE1Q8NF91 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms