Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC245100.7-201ENST00000609678 442 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AP000255.1-201ENST00000610276 676 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AL773545.4-201ENST00000637262 310 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AL513478.4-201ENST00000641636 310 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 MTND5P31-201ENST00000419366 1374 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 RPL7AP25-201ENST00000423357 805 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 ARF4P2-201ENST00000430209 526 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC096638.2-201ENST00000434965 711 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 RPS7P2-201ENST00000435134 607 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 CBX1P1-201ENST00000440184 427 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 VN1R25P-201ENST00000443385 738 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC004022.1-201ENST00000447766 1066 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 SLC31A1P1-201ENST00000451221 567 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 VN1R40P-201ENST00000455196 941 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AL672167.3-201ENST00000465951 960 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 RPL7L1P8-201ENST00000469911 741 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 RPL21P126-201ENST00000470049 478 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 RPL21P47-201ENST00000483696 477 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 HMGB1P22-201ENST00000505315 124 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 IGLVIV-65-201ENST00000517313 360 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 IGJP1-201ENST00000522682 475 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC004217.3-201ENST00000551552 878 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC007599.1-201ENST00000568688 1174 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC104662.1-201ENST00000604448 511 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC011944.2-201ENST00000624440 683 ntBASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
ZNF540Q8NDQ6 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 RNU1-85P-201ENST00000364127 164 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 RNVU1-3-201ENST00000364313 161 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 RNU6-650P-201ENST00000365658 111 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 RNU6-339P-201ENST00000384310 107 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 SNORA70C-201ENST00000384538 135 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 RPS26P8-201ENST00000393490 348 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 TMSB4XP8-201ENST00000402089 135 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AL583834.1-201ENST00000406943 343 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 TMSB4XP6-201ENST00000415187 135 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 TMSB4XP1-201ENST00000424567 135 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AL590103.1-201ENST00000434488 307 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 MTCYBP31-201ENST00000438855 1122 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 PHBP16-201ENST00000446318 950 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AL929288.2-201ENST00000446368 407 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AC010285.1-201ENST00000470580 392 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 RNU1-61P-201ENST00000516107 151 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms