Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.85□□□□□ -1.47
LIG3P49916 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 AC234779.1-201ENST00000425910 285 ntBASIC5.85□□□□□ -1.47
LIG3P49916 CRIP1P1-201ENST00000427567 185 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC092013.1-201ENST00000438795 332 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.85□□□□□ -1.47
LIG3P49916 SEPT14P3-201ENST00000439401 183 ntBASIC5.85□□□□□ -1.47
LIG3P49916 SDCBPP1-201ENST00000440192 890 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AL732372.2-207ENST00000445840 183 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 SEPT14P2-201ENST00000453405 183 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AP1S2P1-201ENST00000457344 379 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RPS20P24-201ENST00000457473 361 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC093267.1-201ENST00000489176 961 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 AC011005.3-201ENST00000491624 395 ntBASIC5.85□□□□□ -1.47
LIG3P49916 MTCO2P30-201ENST00000503662 364 ntBASIC5.85□□□□□ -1.47
LIG3P49916 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.85□□□□□ -1.47
LIG3P49916 SEPT14P4-201ENST00000513445 186 ntBASIC5.85□□□□□ -1.47
LIG3P49916 MIR2117-201ENST00000516780 80 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 IGKV3D-34-201ENST00000522638 302 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 FO082796.1-201ENST00000523795 183 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.85□□□□□ -1.47
LIG3P49916 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
LIG3P49916 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.85□□□□□ -1.47
LIG3P49916 AC123904.2-201ENST00000548059 300 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.85□□□□□ -1.47
LIG3P49916 AC007342.5-201ENST00000571340 2142 ntBASIC5.85□□□□□ -1.47
LIG3P49916 MIR4504-201ENST00000577413 92 ntBASIC5.85□□□□□ -1.47
LIG3P49916 MIR4472-2-201ENST00000582069 67 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 AC044792.1-201ENST00000593294 196 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.85□□□□□ -1.47
LIG3P49916 AC008966.2-201ENST00000606157 453 ntBASIC5.85□□□□□ -1.47
LIG3P49916 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 AC010632.3-201ENST00000611377 369 ntBASIC5.85□□□□□ -1.47
LIG3P49916 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.85□□□□□ -1.47
LIG3P49916 AC127024.6-201ENST00000621598 424 ntBASIC5.85□□□□□ -1.47
LIG3P49916 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 AL031595.2-201ENST00000624215 19071 ntBASIC5.85□□□□□ -1.47
LIG3P49916 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 AC010329.2-201ENST00000595195 2737 ntBASIC5.85□□□□□ -1.47
LIG3P49916 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
LIG3P49916 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
LIG3P49916 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIG3P49916 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIG3P49916 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.84□□□□□ -1.47
LIG3P49916 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.84□□□□□ -1.47
LIG3P49916 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.84□□□□□ -1.47
LIG3P49916 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIG3P49916 AC097461.1-201ENST00000568928 2821 ntBASIC5.84□□□□□ -1.47
LIG3P49916 OR5J1P-201ENST00000313544 939 ntBASIC5.84□□□□□ -1.47
LIG3P49916 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
LIG3P49916 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIG3P49916 RNA5SP394-201ENST00000364216 119 ntBASIC5.84□□□□□ -1.47
LIG3P49916 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIG3P49916 RNU6-456P-201ENST00000384493 107 ntBASIC5.84□□□□□ -1.47
LIG3P49916 Y_RNA.509-201ENST00000384506 99 ntBASIC5.84□□□□□ -1.47
LIG3P49916 RPL31P1-201ENST00000398116 372 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AC078974.1-201ENST00000411597 223 ntBASIC5.84□□□□□ -1.47
LIG3P49916 NPM1P40-201ENST00000412758 733 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
LIG3P49916 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.84□□□□□ -1.47
LIG3P49916 RPL36AP39-201ENST00000445859 318 ntBASIC5.84□□□□□ -1.47
LIG3P49916 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.84□□□□□ -1.47
LIG3P49916 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 AC005297.2-201ENST00000450430 606 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 NXT1P1-201ENST00000458481 316 ntBASIC5.84□□□□□ -1.47
LIG3P49916 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 ENPP7P11-201ENST00000505915 627 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 AC022832.1-201ENST00000530718 645 ntBASIC5.84□□□□□ -1.47
LIG3P49916 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
LIG3P49916 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.84□□□□□ -1.47
LIG3P49916 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.84□□□□□ -1.47
LIG3P49916 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms