Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RPL7P31-201ENST00000450192 724 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.94□□□□□ -1.78
HOXD3P31249 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC091180.1-201ENST00000462104 372 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 RN7SL443P-201ENST00000464331 290 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC010301.1-201ENST00000473936 355 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 IGLV2-34-201ENST00000490007 283 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
HOXD3P31249 OR51K1P-201ENST00000510214 950 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC026412.2-201ENST00000512270 1075 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 MTND5P4-201ENST00000514978 288 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 CASC19-203ENST00000523510 575 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 EDDM3DP-201ENST00000554692 434 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC090515.3-201ENST00000560431 315 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 MIR4691-201ENST00000583764 85 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 RBM11P1-201ENST00000604951 799 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC097468.3-201ENST00000607956 456 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 MIR378J-201ENST00000611988 109 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AL603839.4-201ENST00000624658 1005 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC3.94□□□□□ -1.78
HOXD3P31249 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 ERVFRD-3-201ENST00000578561 1617 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 AL034549.2-201ENST00000618285 3373 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 USP8-204ENST00000425032 3559 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 RNA5SP391-201ENST00000363456 119 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RNU6-289P-201ENST00000364093 107 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RNU5E-5P-201ENST00000365379 116 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RNU6-921P-201ENST00000384361 107 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RNU6-441P-201ENST00000384545 106 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC013442.1-201ENST00000397347 228 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 MIR548F1-201ENST00000408667 84 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RN7SKP33-201ENST00000410942 340 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RPL17P12-201ENST00000413391 526 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 CHEK2P3-201ENST00000416118 248 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC073136.2-201ENST00000417282 849 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC083875.1-201ENST00000419509 405 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 OFD1P18Y-201ENST00000420889 959 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 MTCYBP5-201ENST00000423752 1135 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC009965.2-201ENST00000425328 970 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 GDI2P2-201ENST00000445131 608 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 GAPDHP14-201ENST00000450472 937 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 BX842559.2-201ENST00000451418 605 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 RPS7P7-201ENST00000463499 571 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 RN7SL459P-201ENST00000481078 302 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC093267.1-201ENST00000489176 961 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 CEACAMP10-202ENST00000495431 496 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 KLRA1P-201ENST00000503499 986 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC138853.1-201ENST00000503549 823 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 PRELID3BP7-201ENST00000503606 469 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC098976.1-201ENST00000513014 541 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 OR7H2P-201ENST00000513483 306 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 ARL2BPP5-201ENST00000523141 481 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC013828.2-201ENST00000532487 235 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 AC068446.3-201ENST00000555285 382 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms