Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC068831.4-201ENST00000556118 109 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.21□□□□□ -1.58
SMARCA1P28370 AC068790.4-201ENST00000602474 263 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 WISP1-OT1-201ENST00000602893 642 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 AP000811.1-201ENST00000603803 651 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 AC091488.1-201ENST00000604239 660 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.21□□□□□ -1.58
SMARCA1P28370 AC005332.6-201ENST00000613178 446 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SMARCA1P28370 AC006065.6-201ENST00000625201 545 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC5.21□□□□□ -1.58
SMARCA1P28370 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.21□□□□□ -1.58
SMARCA1P28370 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.21□□□□□ -1.58
SMARCA1P28370 AP001273.1-201ENST00000624493 3152 ntBASIC5.21□□□□□ -1.58
SMARCA1P28370 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.21□□□□□ -1.58
SMARCA1P28370 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.21□□□□□ -1.58
SMARCA1P28370 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.21□□□□□ -1.58
SMARCA1P28370 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
SMARCA1P28370 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SMARCA1P28370 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 MIR3065-201ENST00000390137 79 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 TMSB4XP8-201ENST00000402089 135 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 RNU6-920P-201ENST00000410926 92 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AL136133.1-201ENST00000413694 376 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 TMSB4XP6-201ENST00000415187 135 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 TMSB4XP1-201ENST00000424567 135 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.2□□□□□ -1.58
SMARCA1P28370 RPL31P54-201ENST00000429803 370 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 CEACAMP1-201ENST00000434624 1035 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC129850.1-201ENST00000436203 508 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SMARCA1P28370 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.2□□□□□ -1.58
SMARCA1P28370 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.2□□□□□ -1.58
SMARCA1P28370 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.2□□□□□ -1.58
SMARCA1P28370 RPS6P4-201ENST00000494693 758 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC092045.1-201ENST00000495716 1231 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.2□□□□□ -1.58
SMARCA1P28370 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.2□□□□□ -1.58
SMARCA1P28370 MTCYBP37-201ENST00000510642 1133 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 LTV1P1-201ENST00000510683 1237 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC5.2□□□□□ -1.58
SMARCA1P28370 AP001189.2-201ENST00000527320 189 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 ACTR3BP3-201ENST00000565577 979 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.2□□□□□ -1.58
SMARCA1P28370 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.2□□□□□ -1.58
SMARCA1P28370 MIR4512-201ENST00000583257 77 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC090181.2-201ENST00000602975 672 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC112220.3-201ENST00000605502 502 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AP002360.3-201ENST00000607673 710 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC073114.1-201ENST00000612027 490 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC090116.1-201ENST00000615679 446 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AC243756.2-201ENST00000618406 463 ntBASIC5.2□□□□□ -1.58
SMARCA1P28370 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC5.2□□□□□ -1.58
SMARCA1P28370 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.2□□□□□ -1.58
SMARCA1P28370 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.2□□□□□ -1.58
SMARCA1P28370 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.2□□□□□ -1.58
SMARCA1P28370 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMARCA1P28370 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.19□□□□□ -1.58
SMARCA1P28370 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMARCA1P28370 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMARCA1P28370 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SMARCA1P28370 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMARCA1P28370 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SMARCA1P28370 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.19□□□□□ -1.58
SMARCA1P28370 TPT1P2-201ENST00000413105 503 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 HSFY4P-201ENST00000415994 1181 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 AC009237.2-201ENST00000421358 284 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SMARCA1P28370 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 DNAJC19P7-201ENST00000428811 344 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 AL513175.1-201ENST00000431492 780 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 RPL37P1-201ENST00000432310 284 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SMARCA1P28370 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.19□□□□□ -1.58
SMARCA1P28370 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC5.19□□□□□ -1.58
SMARCA1P28370 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.19□□□□□ -1.58
SMARCA1P28370 AC114495.1-201ENST00000441274 436 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 AL360221.1-201ENST00000445989 335 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 DDX39BP2-208ENST00000453923 258 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.19□□□□□ -1.58
SMARCA1P28370 SETP11-201ENST00000473027 690 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.19□□□□□ -1.58
SMARCA1P28370 AC108022.1-201ENST00000493466 478 ntBASIC5.19□□□□□ -1.58
SMARCA1P28370 SETP14-201ENST00000497538 873 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms