Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.2□□□□□ -1.9
HMGA1P17096 RNU1-143P-201ENST00000516296 146 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 MIMT1-201ENST00000597105 1050 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.2□□□□□ -1.9
HMGA1P17096 Z82195.1-201ENST00000604558 398 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 U1.23-201ENST00000610293 146 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 RNU1-68P-201ENST00000615382 146 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 U1.39-201ENST00000621562 146 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 AP001005.3-201ENST00000622049 129 ntBASIC3.2□□□□□ -1.9
HMGA1P17096 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HMGA1P17096 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.2□□□□□ -1.9
HMGA1P17096 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HMGA1P17096 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.19□□□□□ -1.9
HMGA1P17096 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.19□□□□□ -1.9
HMGA1P17096 AC026523.2-201ENST00000625039 7739 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.19□□□□□ -1.9
HMGA1P17096 MIR184-201ENST00000384962 84 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 Z98941.1-201ENST00000407764 100 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 RNF19BPX-201ENST00000426224 625 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 RPS12P18-201ENST00000442381 270 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 CCRL1P1-201ENST00000449542 1053 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 AC117440.1-201ENST00000474107 571 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 RPS29P26-201ENST00000477483 171 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 AC068724.1-201ENST00000487100 792 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 OR2A20P-203ENST00000498397 1268 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 AP001207.2-201ENST00000519490 539 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.19□□□□□ -1.9
HMGA1P17096 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.19□□□□□ -1.9
HMGA1P17096 AC009101.1-201ENST00000568135 242 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.19□□□□□ -1.9
HMGA1P17096 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.19□□□□□ -1.9
HMGA1P17096 AC074140.1-201ENST00000621617 208 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 AL137790.1-201ENST00000634283 177 ntBASIC3.19□□□□□ -1.9
HMGA1P17096 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HMGA1P17096 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HMGA1P17096 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HMGA1P17096 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.18□□□□□ -1.9
HMGA1P17096 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HMGA1P17096 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HMGA1P17096 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HMGA1P17096 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HMGA1P17096 FAR1P1-201ENST00000427163 934 ntBASIC3.18□□□□□ -1.9
HMGA1P17096 AL139132.1-201ENST00000431587 344 ntBASIC3.18□□□□□ -1.9
HMGA1P17096 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.18□□□□□ -1.9
HMGA1P17096 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.18□□□□□ -1.9
HMGA1P17096 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.18□□□□□ -1.9
HMGA1P17096 AC110741.2-201ENST00000605278 268 ntBASIC3.18□□□□□ -1.9
HMGA1P17096 SCARNA15.3-201ENST00000626315 122 ntBASIC3.18□□□□□ -1.9
HMGA1P17096 SCARNA4.1-201ENST00000628597 123 ntBASIC3.18□□□□□ -1.9
HMGA1P17096 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.18□□□□□ -1.9
HMGA1P17096 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.18□□□□□ -1.9
HMGA1P17096 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HMGA1P17096 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
HMGA1P17096 AC000403.1-201ENST00000613696 3585 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HMGA1P17096 DDX18P3-201ENST00000404856 2007 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
HMGA1P17096 Y_RNA.510-201ENST00000384511 114 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AL353692.2-201ENST00000407054 335 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.17□□□□□ -1.9
HMGA1P17096 B3GNT2P1-201ENST00000434960 952 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC025750.2-201ENST00000442609 450 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 S100A11P1-201ENST00000477525 312 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC106872.2-201ENST00000494303 480 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC108078.3-201ENST00000502633 489 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.17□□□□□ -1.9
HMGA1P17096 FTH1P9-201ENST00000513251 355 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC104027.1-201ENST00000521887 300 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.17□□□□□ -1.9
HMGA1P17096 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.17□□□□□ -1.9
HMGA1P17096 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.17□□□□□ -1.9
HMGA1P17096 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.17□□□□□ -1.9
HMGA1P17096 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.17□□□□□ -1.9
HMGA1P17096 AC008507.1-201ENST00000587506 734 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.17□□□□□ -1.9
HMGA1P17096 IGHV3-29-201ENST00000604817 344 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AL365400.2-201ENST00000605604 902 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 AC139713.2-210ENST00000641741 992 ntBASIC3.17□□□□□ -1.9
HMGA1P17096 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
HMGA1P17096 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HMGA1P17096 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HMGA1P17096 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HMGA1P17096 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.16□□□□□ -1.9
HMGA1P17096 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
HMGA1P17096 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.16□□□□□ -1.9
HMGA1P17096 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
HMGA1P17096 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
HMGA1P17096 MTND5P24-201ENST00000438892 1767 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 RPL7P26-201ENST00000333817 754 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.16□□□□□ -1.9
HMGA1P17096 MIR708-201ENST00000390708 88 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.16□□□□□ -1.9
HMGA1P17096 EEF1A1P41-201ENST00000414667 207 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HMGA1P17096 AC239809.1-201ENST00000450470 217 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.16□□□□□ -1.9
HMGA1P17096 RPS4XP22-201ENST00000480755 780 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 RN7SKP289-201ENST00000517244 295 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms