Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TIMM9P2-201ENST00000419324 266 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.6□□□□□ -1.51
HMGB1P09429 AL590233.1-201ENST00000430017 456 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 NRBF2P3-201ENST00000432731 865 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 MTND4P6-201ENST00000438297 472 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.6□□□□□ -1.51
HMGB1P09429 OR1H1P-201ENST00000448731 937 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.6□□□□□ -1.51
HMGB1P09429 RPL18AP17-201ENST00000455326 198 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AC091868.1-201ENST00000508746 304 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC5.6□□□□□ -1.51
HMGB1P09429 AC093853.1-201ENST00000515689 483 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 RNU6-1095P-201ENST00000516148 108 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 RN7SKP157-201ENST00000516174 282 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AC018630.1-201ENST00000541376 925 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 PCNPP1-201ENST00000552501 511 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.6□□□□□ -1.51
HMGB1P09429 AC079075.1-201ENST00000559543 878 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AC009117.1-201ENST00000563948 554 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AL391358.1-201ENST00000605342 190 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.6□□□□□ -1.51
HMGB1P09429 AC106052.1-201ENST00000608029 497 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.6□□□□□ -1.51
HMGB1P09429 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 AC109809.1-201ENST00000619665 545 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AL360181.4-201ENST00000621752 134 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.6□□□□□ -1.51
HMGB1P09429 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
HMGB1P09429 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGB1P09429 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGB1P09429 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGB1P09429 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 RNU6-636P-201ENST00000384598 107 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AL645733.1-201ENST00000402250 217 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
HMGB1P09429 RNA5SP113-201ENST00000410486 84 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AL591848.1-201ENST00000413092 322 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 AC004074.1-201ENST00000421810 1063 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 NIPA2P1-201ENST00000426223 976 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AC016712.1-201ENST00000431088 378 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 PTENP1-201ENST00000447117 1215 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.59□□□□□ -1.51
HMGB1P09429 AC108751.2-201ENST00000469993 231 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 RNA5SP468-201ENST00000516782 93 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 AL132857.1-201ENST00000555180 708 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGB1P09429 AC044860.2-201ENST00000561005 179 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AL049838.1-201ENST00000563647 981 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AC053481.3-201ENST00000577881 843 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 FAM60BP-201ENST00000578364 658 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGB1P09429 AC107075.1-201ENST00000613695 314 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 AC087385.3-201ENST00000620477 187 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGB1P09429 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGB1P09429 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
HMGB1P09429 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
HMGB1P09429 AL136164.3-201ENST00000624429 3978 ntBASIC5.59□□□□□ -1.51
HMGB1P09429 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HMGB1P09429 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
HMGB1P09429 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGB1P09429 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HMGB1P09429 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGB1P09429 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGB1P09429 OR56B2P-201ENST00000317102 954 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 AP000567.1-201ENST00000406413 156 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGB1P09429 DUTP6-201ENST00000425573 462 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 RABEPKP1-201ENST00000440529 1026 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 RPL36AP15-201ENST00000444514 266 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.58□□□□□ -1.52
HMGB1P09429 Z82190.1-201ENST00000454534 490 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGB1P09429 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HMGB1P09429 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.58□□□□□ -1.52
HMGB1P09429 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGB1P09429 AP001992.1-205ENST00000462248 379 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 AC090142.1-201ENST00000465776 462 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 RPL23AP2-201ENST00000471227 466 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HMGB1P09429 AC078785.3-201ENST00000476607 425 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.58□□□□□ -1.52
HMGB1P09429 ENSA-210ENST00000503241 574 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms