Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL121895.2-201ENST00000619558 447 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC067852.7-201ENST00000623270 535 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AP006248.2-201ENST00000623309 592 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL109659.3-201ENST00000624985 950 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC055839.1-201ENST00000634467 498 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CCDC3Q9BQI4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AP000568.1-201ENST00000282964 442 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RNU6-224P-201ENST00000384055 107 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RNA5SP171-201ENST00000391071 115 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 TMSB4XP8-201ENST00000402089 135 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RNU6ATAC-201ENST00000408749 126 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RNU4-6P-201ENST00000410804 122 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RNU6-575P-201ENST00000411326 105 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 TPT1P2-201ENST00000413105 503 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 TMSB4XP6-201ENST00000415187 135 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 Z75741.2-201ENST00000417272 1167 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 TMSB4XP1-201ENST00000424567 135 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 MTND2P5-201ENST00000432656 1006 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 USP9YP24-201ENST00000434374 697 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC007389.2-201ENST00000434630 306 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 USP9YP17-201ENST00000444617 696 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RPL38P1-201ENST00000460914 211 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC011037.1-201ENST00000483964 558 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC110792.1-201ENST00000491826 472 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 PRELID3BP7-201ENST00000503606 469 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC108145.1-201ENST00000503770 153 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 MTCYBP23-201ENST00000558717 1102 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 NIFKP8-201ENST00000560500 874 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 MIR4512-201ENST00000583257 77 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 MTCO2P2-201ENST00000591258 225 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL035411.2-201ENST00000604022 421 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL392112.1-201ENST00000605115 829 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL451086.1-201ENST00000605596 223 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 RNU4-5P-201ENST00000607255 135 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AL592148.2-201ENST00000612210 372 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 MIR6500-201ENST00000622700 86 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 FAM91A3P-201ENST00000456826 2544 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 DBF4P1-201ENST00000412976 1892 ntBASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC3Q9BQI4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC116667.1-201ENST00000604855 2072 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AL592437.2-201ENST00000421655 2434 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 OR1L1-202ENST00000373686 1083 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 Y_RNA.578-201ENST00000390903 88 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 PTMAP2-201ENST00000397627 327 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 HNRNPDP2-201ENST00000406475 478 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 RPL23AP48-201ENST00000406913 488 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 RNU6-272P-201ENST00000411028 104 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 NANOGP5-201ENST00000424456 877 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AL451062.2-201ENST00000427515 271 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms