Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC073530.2-201ENST00000623987 261 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 AL512283.1-201ENST00000606756 1384 ntBASIC3.85□□□□□ -1.79
VPS35Q96QK1 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS35Q96QK1 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS35Q96QK1 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS35Q96QK1 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS35Q96QK1 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 RNU6-609P-201ENST00000365459 107 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 RNU6-481P-201ENST00000384194 107 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 MIR153-1-201ENST00000384914 90 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 RPS15AP40-201ENST00000419621 391 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS35Q96QK1 USP9YP7-201ENST00000436723 430 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS35Q96QK1 USP9YP32-201ENST00000452432 430 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC008280.2-201ENST00000455473 307 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 snoU13.7-201ENST00000459220 104 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 RNA5SP164-201ENST00000516533 110 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS35Q96QK1 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 SERPINE4P-201ENST00000554978 281 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC015726.1-201ENST00000602353 681 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 LLPHP1-201ENST00000603571 367 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC005972.3-201ENST00000606304 481 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AP003392.5-201ENST00000607857 415 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 VN1R9P-201ENST00000614184 867 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 AL354798.1-201ENST00000622505 329 ntBASIC3.84□□□□□ -1.79
VPS35Q96QK1 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS35Q96QK1 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS35Q96QK1 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
VPS35Q96QK1 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.84□□□□□ -1.8
VPS35Q96QK1 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 SNORD6-201ENST00000365444 73 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 U1.1-201ENST00000384101 164 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 DNAJC19P6-201ENST00000401853 280 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 SNORA3.3-201ENST00000408712 125 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC092017.2-201ENST00000427600 362 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 OR4F13P-201ENST00000428478 931 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC087650.1-201ENST00000431445 468 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 RPL6P5-201ENST00000445678 828 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 MTND1P33-201ENST00000446251 917 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 RPL23AP15-201ENST00000450202 459 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 SNORD108-201ENST00000459332 71 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC015724.1-201ENST00000478577 156 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 SETP6-201ENST00000479329 568 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 RPL21P103-201ENST00000479921 488 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC069499.1-201ENST00000489433 509 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 RN7SL323P-201ENST00000494712 295 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AL139099.1-201ENST00000497398 403 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC112518.2-201ENST00000508565 425 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC108043.1-201ENST00000512696 574 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC026726.1-201ENST00000512859 601 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 RNA5SP309-201ENST00000516670 106 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 MTND2P26-201ENST00000528255 1029 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AP003717.3-201ENST00000544832 1180 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms