Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PLCE1P1-201ENST00000622094 305 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AC008432.1-201ENST00000615912 1320 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 MFSD8-213ENST00000641134 1327 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 MTND4P21-201ENST00000453886 1357 ntBASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
ZNF540Q8NDQ6 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
ZNF540Q8NDQ6 AC002546.1-201ENST00000588041 2504 ntBASIC3.84□□□□□ -1.8
ZNF540Q8NDQ6 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
ZNF540Q8NDQ6 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
ZNF540Q8NDQ6 Z82217.1-201ENST00000625157 8149 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 MAPK10-373ENST00000641983 6772 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC126755.2-208ENST00000327792 462 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC138969.1-213ENST00000331436 462 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 MIR659-201ENST00000384963 97 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 OR6C69P-201ENST00000394268 893 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 RNA5SP56-201ENST00000410277 118 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC011933.1-201ENST00000413334 321 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 MTCO3P12-201ENST00000416718 547 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 TCEA1P2-201ENST00000420496 906 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC233981.1-201ENST00000423224 461 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 HMGN2P20-201ENST00000437531 273 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 RNFT1P2-201ENST00000443064 757 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AL136097.1-201ENST00000456945 913 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 RPL7P32-201ENST00000457119 744 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC116533.1-201ENST00000459748 321 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC103987.1-201ENST00000473394 348 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC010342.1-201ENST00000514047 877 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 MIR2116-201ENST00000517221 80 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AL731537.2-201ENST00000561565 951 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 BNIP3P5-201ENST00000562290 498 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC074051.3-201ENST00000570238 358 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC023575.1-201ENST00000580510 358 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC015911.5-201ENST00000587076 451 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC079587.1-201ENST00000603846 277 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC021851.1-201ENST00000608537 1082 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 VIS1.1-201ENST00000610517 203 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC105227.2-201ENST00000615075 605 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC068722.2-201ENST00000618734 544 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 PRO1804-201ENST00000623780 2050 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 AL365440.1-201ENST00000436135 2167 ntBASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF540Q8NDQ6 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC073055.1-201ENST00000456901 1621 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC024560.2-201ENST00000507981 1497 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 Y_RNA.493-201ENST00000384422 102 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RNU6-441P-201ENST00000384545 106 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RNA5SP129-201ENST00000410276 118 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 TOMM22P1-201ENST00000418578 312 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RPL21P109-201ENST00000422213 475 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RPS29P17-201ENST00000430795 166 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 ATP5HP2-201ENST00000433885 485 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RAB11AP1-201ENST00000442978 646 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 Z99714.1-201ENST00000450463 807 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 snoU13.24-201ENST00000458998 104 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RN7SL330P-201ENST00000469709 307 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RPL31P61-201ENST00000496160 376 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RNU6-362P-201ENST00000516736 90 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 RNA5SP468-201ENST00000516782 93 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 MTND2P7-201ENST00000521337 640 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 MED28P5-201ENST00000528254 438 ntBASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF540Q8NDQ6 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms