Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL512661.1-201ENST00000434586 1253 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC105402.2-201ENST00000438503 358 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.59□□□□□ -1.83
PKNOX1P55347 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC104689.1-201ENST00000473356 768 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 RN7SL323P-201ENST00000494712 295 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AP001086.1-201ENST00000494882 321 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC090071.1-201ENST00000507713 644 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC110792.2-201ENST00000510278 224 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC108064.1-201ENST00000513791 460 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.59□□□□□ -1.83
PKNOX1P55347 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.59□□□□□ -1.83
PKNOX1P55347 OR7E13P-201ENST00000526052 910 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PKNOX1P55347 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC106734.1-201ENST00000568646 663 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC113194.1-201ENST00000606037 500 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 RMST_8.1-201ENST00000610287 165 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 STMN1P1-201ENST00000617809 440 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 FRG1HP-204ENST00000617940 757 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.59□□□□□ -1.83
PKNOX1P55347 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PKNOX1P55347 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.59□□□□□ -1.83
PKNOX1P55347 AC104446.1-201ENST00000613728 1321 ntBASIC3.59□□□□□ -1.83
PKNOX1P55347 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PKNOX1P55347 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PKNOX1P55347 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
PKNOX1P55347 USP8P1-201ENST00000494673 3183 ntBASIC3.59□□□□□ -1.84
PKNOX1P55347 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.59□□□□□ -1.84
PKNOX1P55347 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PKNOX1P55347 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
PKNOX1P55347 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PKNOX1P55347 SPRR2C-201ENST00000290702 219 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 ENSAP3-201ENST00000312710 333 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 RNU1-13P-201ENST00000384499 162 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 MIR124-3-201ENST00000384866 87 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AL136116.1-201ENST00000403591 381 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AL158050.1-201ENST00000416077 457 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC008065.1-201ENST00000428525 348 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AL117339.2-201ENST00000430475 180 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.58□□□□□ -1.84
PKNOX1P55347 RPL21P89-201ENST00000444021 467 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 HSFY6P-201ENST00000445573 403 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.58□□□□□ -1.84
PKNOX1P55347 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC026979.1-201ENST00000492525 396 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AC012170.1-201ENST00000495139 359 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.58□□□□□ -1.84
PKNOX1P55347 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC008565.1-201ENST00000509046 885 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 PCBP2P3-201ENST00000509726 843 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 SCARNA14-201ENST00000516903 136 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 RNU6-1231P-201ENST00000517185 103 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AP000926.4-201ENST00000527351 454 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AP003168.1-201ENST00000530091 307 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.58□□□□□ -1.84
PKNOX1P55347 TRAV15-201ENST00000556680 249 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 MIR4425-201ENST00000580572 84 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.58□□□□□ -1.84
PKNOX1P55347 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.58□□□□□ -1.84
PKNOX1P55347 AL365503.1-201ENST00000605247 905 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 RNA5SP108-201ENST00000605921 117 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC097460.3-201ENST00000623099 442 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AP000553.6-201ENST00000641242 118 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AC024560.2-201ENST00000507981 1497 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 AC119744.1-201ENST00000454746 1715 ntBASIC3.58□□□□□ -1.84
PKNOX1P55347 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.58□□□□□ -1.84
PKNOX1P55347 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PKNOX1P55347 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PKNOX1P55347 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PKNOX1P55347 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PKNOX1P55347 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.57□□□□□ -1.84
PKNOX1P55347 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
PKNOX1P55347 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
PKNOX1P55347 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PKNOX1P55347 AC126755.2-208ENST00000327792 462 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 AC138969.1-213ENST00000331436 462 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PKNOX1P55347 SOD2P1-201ENST00000396543 562 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 RN7SKP285-201ENST00000410137 318 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 UBE2V1P11-201ENST00000411559 285 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 AL807761.1-201ENST00000417622 171 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 OSTCP5-201ENST00000425293 453 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 MTATP6P11-201ENST00000428071 670 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.57□□□□□ -1.84
PKNOX1P55347 ETF1P3-201ENST00000430422 1160 ntBASIC3.57□□□□□ -1.84
PKNOX1P55347 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms