Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 MTCO1P57-201ENST00000432182 261 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 AL035458.1-201ENST00000433096 585 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 AL645931.1-201ENST00000439737 410 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 RPL31P20-201ENST00000449593 360 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA9P31269 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA9P31269 TMED11P-201ENST00000479478 690 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 AP000563.1-201ENST00000490865 758 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 TRAV31-201ENST00000502780 342 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 FTH1P24-201ENST00000503502 462 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 RN7SKP209-201ENST00000516888 304 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA9P31269 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA9P31269 AC008011.1-201ENST00000545989 227 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA9P31269 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA9P31269 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA9P31269 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA9P31269 AP003355.3-201ENST00000623465 114 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 AC092159.4-201ENST00000624944 550 ntBASIC3.77□□□□□ -1.81
HOXA9P31269 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA9P31269 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA9P31269 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA9P31269 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA9P31269 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA9P31269 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA9P31269 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA9P31269 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA9P31269 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
HOXA9P31269 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXA9P31269 MIR7-1-201ENST00000384871 110 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 RNA5SP120-201ENST00000410900 112 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 HMGB3P20-201ENST00000417997 600 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 IFNNP1-201ENST00000429219 553 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 MTCO1P52-201ENST00000433928 531 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA9P31269 HMGB3P30-201ENST00000457863 606 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AP000873.1-201ENST00000463987 400 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA9P31269 TRBV12-2-201ENST00000489763 344 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA9P31269 AC098799.1-201ENST00000504752 800 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA9P31269 RNU2-27P-201ENST00000516185 142 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA9P31269 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA9P31269 RPL21P12-201ENST00000559810 515 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AL109741.3-201ENST00000561748 592 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AC015911.5-201ENST00000587076 451 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AC073111.2-201ENST00000605657 1075 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AC009032.1-201ENST00000617574 431 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 RMST_5.1-201ENST00000618704 126 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 AP001002.2-201ENST00000625137 386 ntBASIC3.76□□□□□ -1.81
HOXA9P31269 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA9P31269 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
HOXA9P31269 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA9P31269 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA9P31269 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA9P31269 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA9P31269 MFSD8-236ENST00000641509 4050 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA9P31269 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA9P31269 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA9P31269 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA9P31269 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA9P31269 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA9P31269 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA9P31269 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA9P31269 U3.19-201ENST00000390893 196 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA9P31269 AC017083.1-201ENST00000428093 483 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 ELOCP6-201ENST00000429066 328 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 RSL24D1P8-201ENST00000434442 492 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 PPIAP17-201ENST00000438507 471 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA9P31269 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA9P31269 BX510359.1-201ENST00000456973 237 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 ELOCP12-201ENST00000458706 328 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 RN7SL93P-201ENST00000463035 293 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 RPL21P10-201ENST00000463521 490 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 RPS4XP10-201ENST00000465034 731 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 SNORA70.18-201ENST00000516696 98 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 RNU6-579P-201ENST00000516879 102 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
HOXA9P31269 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA9P31269 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
HOXA9P31269 AC092851.1-201ENST00000535964 478 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AC011611.1-201ENST00000552179 197 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AC022884.3-201ENST00000579571 248 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA9P31269 NF1P5-201ENST00000588287 448 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 KATNBL1P1-201ENST00000605192 748 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AC103710.3-201ENST00000608157 948 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AC012531.5-201ENST00000611375 151 ntBASIC3.75□□□□□ -1.81
HOXA9P31269 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA9P31269 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA9P31269 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA9P31269 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA9P31269 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.75□□□□□ -1.81
HOXA9P31269 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms