Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AC062029.1-202ENST00000606164 3651 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNA5SP333-201ENST00000363466 118 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNU6-704P-201ENST00000364162 103 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNA5SP334-201ENST00000364825 118 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNU6-806P-201ENST00000365147 105 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 Y_RNA.378-201ENST00000365652 113 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 SNORA75.6-201ENST00000391318 127 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNU2-51P-201ENST00000410708 197 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 TRAPPC2P3-201ENST00000443200 321 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 TRGVB-201ENST00000453257 471 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AL353752.1-201ENST00000454946 260 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RN7SL717P-201ENST00000478343 297 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNU6-346P-201ENST00000516288 111 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 RNU6-256P-201ENST00000516747 97 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 IL7-206ENST00000520269 456 ntTSL 3 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 BNIP3P25-201ENST00000596023 559 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AC008555.7-201ENST00000605008 583 ntBASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.42□□□□□ -1.38
NPAS3Q8IXF0 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC008957.3-201ENST00000624112 2242 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC022905.1-201ENST00000503430 3048 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 DDX18P6-201ENST00000450119 1997 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RNU6-730P-201ENST00000383954 104 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 Y_RNA.404-201ENST00000383978 102 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RNU6-378P-201ENST00000384324 107 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RNU6-452P-201ENST00000384406 107 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 SNORD116-23-201ENST00000384645 92 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 MIR613-201ENST00000385248 95 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RPL36P18-201ENST00000419316 318 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 BX284632.2-201ENST00000421091 399 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AL035660.1-201ENST00000422041 222 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 OR4K11P-201ENST00000431829 904 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RPL21P110-201ENST00000433345 446 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AL359955.2-201ENST00000445380 353 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC079781.2-201ENST00000446424 169 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 MTND1P17-201ENST00000448961 204 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 GAPDHP14-201ENST00000450472 937 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC023141.9-201ENST00000458734 412 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RPS3AP41-201ENST00000462701 778 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RPL5P22-201ENST00000480199 884 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RN7SL284P-201ENST00000498823 275 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC006499.2-201ENST00000513470 337 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RNU4-77P-201ENST00000516692 156 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC084337.1-201ENST00000524809 686 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 OR4K8P-201ENST00000578842 1048 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC009229.3-201ENST00000608056 282 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AL391813.2-201ENST00000609113 322 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 RPL23AP61-201ENST00000623642 466 ntBASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.41□□□□□ -1.38
NPAS3Q8IXF0 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms