Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 GTF2IP12-201ENST00000456547 356 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 RPL23AP14-201ENST00000468281 468 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 RPL21P18-201ENST00000469899 480 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AL132838.2-201ENST00000492041 314 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 FTH1P24-201ENST00000503502 462 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC104108.1-201ENST00000509930 412 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 AP003355.1-201ENST00000518956 587 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC068339.2-201ENST00000534395 618 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC011611.5-201ENST00000552477 578 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC104072.1-201ENST00000568817 668 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC090312.2-201ENST00000582687 378 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC022146.1-201ENST00000595307 847 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 EIF1P6-201ENST00000600054 334 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC016542.1-201ENST00000608259 493 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 AC068880.4-201ENST00000623082 495 ntBASIC3.49□□□□□ -1.85
SKA3Q8IX90 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.49□□□□□ -1.85
SKA3Q8IX90 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SKA3Q8IX90 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL049737.1-201ENST00000413920 1403 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL139811.1-201ENST00000424779 2299 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SKA3Q8IX90 MIR372-201ENST00000362225 67 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 RNU6-328P-201ENST00000390887 106 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 HMGN2P8-201ENST00000391458 268 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SKA3Q8IX90 RPL7AP73-201ENST00000413490 353 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC114814.2-201ENST00000419195 485 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 RPL30P3-201ENST00000424262 333 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 DEFB130D-201ENST00000426866 237 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC004975.1-201ENST00000428733 208 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC092170.1-201ENST00000440211 356 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 HSFY3P-201ENST00000444242 1191 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL162151.2-201ENST00000448875 158 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC110792.1-201ENST00000491826 472 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC023050.1-201ENST00000498198 304 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 RNA5SP179-201ENST00000517284 121 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC008802.1-201ENST00000519121 791 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 PDCL2P2-201ENST00000533651 189 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC007224.1-201ENST00000564410 144 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 MIR4697-201ENST00000582977 78 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC005255.1-201ENST00000593748 216 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC020910.2-201ENST00000603635 610 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC091167.4-201ENST00000605079 184 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AL591424.2-201ENST00000617023 128 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 ZYXP1-201ENST00000617638 118 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 C2orf27A-204ENST00000623058 969 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 AC092608.3-201ENST00000625017 386 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 RNA5SP196-201ENST00000625967 102 ntBASIC3.48□□□□□ -1.85
SKA3Q8IX90 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SKA3Q8IX90 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
SKA3Q8IX90 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SKA3Q8IX90 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SKA3Q8IX90 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 AC119744.1-201ENST00000454746 1715 ntBASIC3.47□□□□□ -1.85
SKA3Q8IX90 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SKA3Q8IX90 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SKA3Q8IX90 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SKA3Q8IX90 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SKA3Q8IX90 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SKA3Q8IX90 RNA5SP283-201ENST00000365604 119 ntBASIC3.47□□□□□ -1.85
SKA3Q8IX90 SNORA11C-201ENST00000408532 129 ntBASIC3.47□□□□□ -1.85
SKA3Q8IX90 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 RPS12P23-201ENST00000419579 400 ntBASIC3.47□□□□□ -1.85
SKA3Q8IX90 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.47□□□□□ -1.85
SKA3Q8IX90 AL117339.2-201ENST00000430475 180 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms