Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 RNU4-91P-201ENST00000364778 135 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL389915.1-201ENST00000422463 466 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 OR2AH1P-201ENST00000425717 928 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 HSPE1P28-201ENST00000443139 211 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC011753.3-201ENST00000443436 406 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC068724.1-201ENST00000487100 792 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC091965.2-201ENST00000512324 613 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC006427.1-201ENST00000514359 712 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 Y_RNA.655-201ENST00000515919 96 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 RFPL1S-203ENST00000539579 330 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC141257.3-201ENST00000572906 215 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 MIR4737-201ENST00000583979 81 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AC128687.1-201ENST00000605304 619 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 BX005214.3-202ENST00000619809 325 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 AP000648.2-201ENST00000624182 404 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC144BQ3MJ40 BTBD10P1-201ENST00000549824 1352 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AP001642.1-201ENST00000624727 2117 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 RNU5F-7P-201ENST00000363696 115 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 RPS24P12-201ENST00000402084 394 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 RN7SKP266-201ENST00000410232 287 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AL365184.2-201ENST00000431139 435 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC112498.1-201ENST00000444401 332 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC022034.3-201ENST00000471393 478 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC010424.1-201ENST00000506336 297 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 PGBD4P4-201ENST00000509673 613 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 RN7SKP234-201ENST00000517173 224 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC022360.1-201ENST00000521058 340 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AP000873.5-201ENST00000533906 236 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 MIR4270-201ENST00000581799 70 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC234771.5-201ENST00000600161 514 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AL355812.1-201ENST00000603215 216 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 AC105254.2-201ENST00000603636 436 ntBASIC5.8□□□□□ -1.48
CCDC144BQ3MJ40 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms