Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AL138885.1-201ENST00000405921 675 ntBASIC3.77□□□□□ -1.81
SHHQ15465 GSTM3P2-201ENST00000412746 530 ntBASIC3.77□□□□□ -1.81
SHHQ15465 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.77□□□□□ -1.81
SHHQ15465 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHHQ15465 AL353678.1-201ENST00000422735 741 ntBASIC3.77□□□□□ -1.81
SHHQ15465 OR6K4P-201ENST00000423179 955 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC107083.1-201ENST00000439643 279 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.77□□□□□ -1.81
SHHQ15465 AL354710.1-201ENST00000453641 246 ntBASIC3.77□□□□□ -1.81
SHHQ15465 EIF2S2P4-201ENST00000461070 984 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC004924.1-201ENST00000480160 781 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.77□□□□□ -1.81
SHHQ15465 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.77□□□□□ -1.81
SHHQ15465 AC021678.1-201ENST00000505195 936 ntBASIC3.77□□□□□ -1.81
SHHQ15465 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3.77□□□□□ -1.81
SHHQ15465 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHHQ15465 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 PTGES3P3-201ENST00000511479 482 ntBASIC3.77□□□□□ -1.81
SHHQ15465 IGHV3-63-201ENST00000518422 341 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 AC087276.1-201ENST00000529659 480 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.77□□□□□ -1.81
SHHQ15465 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 AC004024.1-201ENST00000549244 247 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC087888.1-201ENST00000550884 1254 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.77□□□□□ -1.81
SHHQ15465 TRAV15-201ENST00000556680 249 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.77□□□□□ -1.81
SHHQ15465 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 AC027281.1-201ENST00000574178 758 ntBASIC3.77□□□□□ -1.81
SHHQ15465 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
SHHQ15465 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.77□□□□□ -1.81
SHHQ15465 AC138932.5-201ENST00000617759 563 ntBASIC3.77□□□□□ -1.81
SHHQ15465 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.77□□□□□ -1.81
SHHQ15465 MIR4727-201ENST00000622232 55 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AL732618.1-201ENST00000623251 301 ntBASIC3.77□□□□□ -1.81
SHHQ15465 AP003355.3-201ENST00000623465 114 ntBASIC3.77□□□□□ -1.81
SHHQ15465 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.77□□□□□ -1.81
SHHQ15465 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.77□□□□□ -1.81
SHHQ15465 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHHQ15465 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
SHHQ15465 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHHQ15465 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHHQ15465 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
SHHQ15465 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHHQ15465 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.76□□□□□ -1.81
SHHQ15465 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 RNA5SP52-201ENST00000362448 134 ntBASIC3.76□□□□□ -1.81
SHHQ15465 HMGB3P20-201ENST00000417997 600 ntBASIC3.76□□□□□ -1.81
SHHQ15465 RPS6P12-201ENST00000432491 726 ntBASIC3.76□□□□□ -1.81
SHHQ15465 RPL7P59-201ENST00000447700 943 ntBASIC3.76□□□□□ -1.81
SHHQ15465 CLIC4P1-201ENST00000453177 535 ntBASIC3.76□□□□□ -1.81
SHHQ15465 AC025554.1-201ENST00000505641 188 ntBASIC3.76□□□□□ -1.81
SHHQ15465 AC110794.1-201ENST00000505816 425 ntBASIC3.76□□□□□ -1.81
SHHQ15465 PPBPP1-201ENST00000510807 373 ntBASIC3.76□□□□□ -1.81
SHHQ15465 AC117525.1-201ENST00000515228 503 ntBASIC3.76□□□□□ -1.81
SHHQ15465 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 AC084033.1-201ENST00000550830 633 ntBASIC3.76□□□□□ -1.81
SHHQ15465 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.76□□□□□ -1.81
SHHQ15465 FAM60CP-201ENST00000591086 664 ntBASIC3.76□□□□□ -1.81
SHHQ15465 AC123786.2-201ENST00000603459 275 ntBASIC3.76□□□□□ -1.81
SHHQ15465 IGHV3-29-201ENST00000604817 344 ntBASIC3.76□□□□□ -1.81
SHHQ15465 AC015802.5-201ENST00000607478 399 ntBASIC3.76□□□□□ -1.81
SHHQ15465 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.76□□□□□ -1.81
SHHQ15465 AC004825.2-201ENST00000616634 455 ntBASIC3.76□□□□□ -1.81
SHHQ15465 RMST_5.1-201ENST00000618704 126 ntBASIC3.76□□□□□ -1.81
SHHQ15465 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 AC093311.1-201ENST00000506586 2021 ntBASIC3.76□□□□□ -1.81
SHHQ15465 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
SHHQ15465 AC009313.2-201ENST00000417893 1941 ntBASIC3.76□□□□□ -1.81
SHHQ15465 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHHQ15465 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SHHQ15465 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SHHQ15465 AL031985.3-201ENST00000565390 2449 ntBASIC3.75□□□□□ -1.81
SHHQ15465 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.75□□□□□ -1.81
SHHQ15465 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.75□□□□□ -1.81
SHHQ15465 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
SHHQ15465 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
SHHQ15465 AC118273.1-201ENST00000525324 3006 ntBASIC3.75□□□□□ -1.81
SHHQ15465 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.75□□□□□ -1.81
SHHQ15465 RNU1-140P-201ENST00000365040 165 ntBASIC3.75□□□□□ -1.81
SHHQ15465 RNU6-225P-201ENST00000384613 103 ntBASIC3.75□□□□□ -1.81
SHHQ15465 RNU4-47P-201ENST00000410876 114 ntBASIC3.75□□□□□ -1.81
SHHQ15465 HMGN1P24-201ENST00000412282 298 ntBASIC3.75□□□□□ -1.81
SHHQ15465 AC017079.2-201ENST00000416102 485 ntBASIC3.75□□□□□ -1.81
SHHQ15465 OOSP1P1-201ENST00000423265 274 ntBASIC3.75□□□□□ -1.81
SHHQ15465 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.75□□□□□ -1.81
SHHQ15465 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms