Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AL136520.1-201ENST00000600311 1322 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AL627171.1-201ENST00000618845 1308 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 MIR208A-201ENST00000362287 71 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 SNORA63.1-201ENST00000362493 131 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 RNU6-1293P-201ENST00000384077 107 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 MIR199A2-201ENST00000385289 110 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 RPL22P22-201ENST00000395439 379 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 HSPD1P16-201ENST00000402302 394 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 RNU6-77P-201ENST00000410554 91 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 NUP35P2-201ENST00000416748 943 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 SYF2P2-201ENST00000417620 583 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 OR4F13P-201ENST00000428478 931 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 RANP8-201ENST00000444720 713 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AL451050.1-201ENST00000450126 415 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 TCP11X3P-202ENST00000514289 1254 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 IGKV2-38-201ENST00000517443 247 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AP003355.1-201ENST00000518956 587 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AP000619.3-201ENST00000535634 1127 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 CCNG2P1-201ENST00000549521 1000 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC124068.1-201ENST00000563131 678 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC010680.4-201ENST00000605334 543 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AL359535.1-201ENST00000612100 1087 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AL391261.4-201ENST00000616012 481 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 RNU6-156P-201ENST00000621869 107 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC009452.1-201ENST00000640823 606 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
TNFRSF4P43489 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TNFRSF4P43489 AC025125.1-201ENST00000624743 1922 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 DCAF13P3-201ENST00000561147 1334 ntBASIC3.93□□□□□ -1.78
TNFRSF4P43489 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC024560.2-201ENST00000507981 1497 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 MAPK10-349ENST00000641767 3661 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC016716.1-201ENST00000265882 708 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 GCNT6-201ENST00000379591 934 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 U6.112-201ENST00000384129 70 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 RNU6-932P-201ENST00000391108 106 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 RPS3AP25-201ENST00000411660 793 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC093578.1-201ENST00000415219 368 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL035423.1-201ENST00000420331 213 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 RWDD4P2-201ENST00000426392 563 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC006499.6-201ENST00000511169 607 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC021146.3-201ENST00000511911 260 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 MTCO3P27-201ENST00000514397 196 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 IGJP1-201ENST00000522682 475 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AP003117.2-201ENST00000606010 545 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC113194.1-201ENST00000606037 500 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL031666.3-201ENST00000609320 1006 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 AL590396.4-201ENST00000636779 956 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.92□□□□□ -1.78
TNFRSF4P43489 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 162.7 ms