Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC025125.1-201ENST00000624743 1922 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.53□□□□□ -1.68
PTPN9P43378 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
PTPN9P43378 AC067945.1-201ENST00000342609 618 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 RNU6-582P-201ENST00000362989 107 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 RNA5SP447-201ENST00000363749 119 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 RNA5SP175-201ENST00000364275 119 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 SNORD116-8-201ENST00000384365 95 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 RSL24D1P4-201ENST00000400938 484 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 PRRC2CP1-201ENST00000404428 159 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AL356131.1-201ENST00000405826 414 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 VN1R8P-201ENST00000407739 893 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.53□□□□□ -1.68
PTPN9P43378 RPL12P34-201ENST00000424532 479 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AL031736.2-201ENST00000426573 787 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 YWHAZP7-201ENST00000436906 631 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 RAB11AP1-201ENST00000442978 646 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 PHBP16-201ENST00000446318 950 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC104978.1-201ENST00000449387 391 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 RN7SL738P-201ENST00000470264 297 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN9P43378 RPS3AP22-201ENST00000488297 769 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC104090.1-201ENST00000506341 1171 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AC109471.1-201ENST00000511631 612 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AC118465.1-201ENST00000513820 1271 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 RNU6-885P-201ENST00000516607 104 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 GTF2IP8-201ENST00000560687 584 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AL132657.2-201ENST00000564417 358 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC079171.1-201ENST00000568788 914 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN9P43378 AC022069.1-201ENST00000582910 658 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 AC073348.1-201ENST00000623002 331 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC078883.4-201ENST00000623218 367 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 AC140479.6-201ENST00000633535 357 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 AC026634.1-201ENST00000634369 198 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN9P43378 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
PTPN9P43378 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN9P43378 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.53□□□□□ -1.68
PTPN9P43378 XPOTP1-201ENST00000443317 2398 ntBASIC4.53□□□□□ -1.68
PTPN9P43378 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN9P43378 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PTPN9P43378 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN9P43378 AC109315.1-201ENST00000584143 1347 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AC090971.4-201ENST00000560291 1800 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN9P43378 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN9P43378 RNU1-15P-201ENST00000353977 144 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
PTPN9P43378 SNORD66.1-201ENST00000391230 76 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 TAF9BP1-201ENST00000396646 746 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AL121978.1-201ENST00000402778 359 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AL133264.1-201ENST00000407157 562 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 EIF4A1P3-201ENST00000411521 244 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN9P43378 EIF1P3-201ENST00000423841 334 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN9P43378 AL158073.1-201ENST00000426848 1104 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN9P43378 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN9P43378 RPL37P1-201ENST00000432310 284 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN9P43378 RPL12P46-201ENST00000436610 195 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN9P43378 NF1P3-201ENST00000457709 450 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 RPL23AP24-201ENST00000458203 385 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.52□□□□□ -1.69
PTPN9P43378 NDUFA5P9-201ENST00000472609 340 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 GAPDHP36-201ENST00000480688 918 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN9P43378 KLRA1P-201ENST00000503499 986 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN9P43378 AC025674.1-201ENST00000507074 324 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN9P43378 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN9P43378 RPL7L1P13-201ENST00000511702 739 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.52□□□□□ -1.69
PTPN9P43378 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.52□□□□□ -1.69
PTPN9P43378 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.52□□□□□ -1.69
PTPN9P43378 AC105185.1-201ENST00000518705 535 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN9P43378 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PTPN9P43378 AC093519.1-201ENST00000566109 298 ntBASIC4.52□□□□□ -1.69
PTPN9P43378 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms