Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 MUC2-202ENST00000613187 4845 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC104260.2-201ENST00000623551 3497 ntBASIC4.96□□□□□ -1.61
MSX2P35548 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
MSX2P35548 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.96□□□□□ -1.61
MSX2P35548 MTCO1P14-201ENST00000441695 1559 ntBASIC4.96□□□□□ -1.62
MSX2P35548 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AL731566.1-201ENST00000620490 1937 ntBASIC4.96□□□□□ -1.62
MSX2P35548 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 Y_RNA.295-201ENST00000364918 102 ntBASIC4.96□□□□□ -1.62
MSX2P35548 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
MSX2P35548 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 MIR92A2-201ENST00000385299 75 ntBASIC4.96□□□□□ -1.62
MSX2P35548 ARL4AP5-201ENST00000404372 599 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AL390316.1-201ENST00000406279 553 ntBASIC4.96□□□□□ -1.62
MSX2P35548 RNU2-50P-201ENST00000410494 143 ntBASIC4.96□□□□□ -1.62
MSX2P35548 NUP35P2-201ENST00000416748 943 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC009302.1-201ENST00000417147 390 ntBASIC4.96□□□□□ -1.62
MSX2P35548 RPL21P111-201ENST00000418453 477 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC013429.2-201ENST00000418798 781 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AL035660.1-201ENST00000422041 222 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AL133173.1-201ENST00000423458 397 ntBASIC4.96□□□□□ -1.62
MSX2P35548 NPM1P22-201ENST00000427761 952 ntBASIC4.96□□□□□ -1.62
MSX2P35548 BX890604.2-201ENST00000427883 474 ntBASIC4.96□□□□□ -1.62
MSX2P35548 GSTM5P1-201ENST00000434751 660 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC019185.1-201ENST00000442718 389 ntBASIC4.96□□□□□ -1.62
MSX2P35548 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.96□□□□□ -1.62
MSX2P35548 YWHAQP9-201ENST00000445891 512 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.96□□□□□ -1.62
MSX2P35548 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX2P35548 RPS27AP15-201ENST00000447672 466 ntBASIC4.96□□□□□ -1.62
MSX2P35548 RNA5SP103-201ENST00000459503 118 ntBASIC4.96□□□□□ -1.62
MSX2P35548 RBM43P1-201ENST00000476891 1081 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AL161747.1-201ENST00000480068 358 ntBASIC4.96□□□□□ -1.62
MSX2P35548 RPS29P25-201ENST00000481709 171 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC012170.1-201ENST00000495139 359 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC104109.1-201ENST00000498563 436 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC108064.1-201ENST00000513791 460 ntBASIC4.96□□□□□ -1.62
MSX2P35548 SNORA70.20-201ENST00000516848 126 ntBASIC4.96□□□□□ -1.62
MSX2P35548 SCARNA16.4-201ENST00000516956 187 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX2P35548 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX2P35548 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 AL157687.1-201ENST00000554853 619 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.62
MSX2P35548 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX2P35548 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX2P35548 AC009977.1-201ENST00000586015 570 ntBASIC4.96□□□□□ -1.62
MSX2P35548 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 AC012616.1-201ENST00000600294 197 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC112187.2-201ENST00000604345 283 ntBASIC4.96□□□□□ -1.62
MSX2P35548 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 AC068880.5-201ENST00000624331 290 ntBASIC4.96□□□□□ -1.62
MSX2P35548 AC026634.1-201ENST00000634369 198 ntBASIC4.96□□□□□ -1.62
MSX2P35548 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 AL672167.1-203ENST00000641299 2975 ntBASIC4.96□□□□□ -1.62
MSX2P35548 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
MSX2P35548 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.96□□□□□ -1.62
MSX2P35548 AL022578.1-201ENST00000439330 1433 ntBASIC4.96□□□□□ -1.62
MSX2P35548 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX2P35548 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX2P35548 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.96□□□□□ -1.62
MSX2P35548 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.95□□□□□ -1.62
MSX2P35548 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
MSX2P35548 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 AP000756.2-201ENST00000624168 2567 ntBASIC4.95□□□□□ -1.62
MSX2P35548 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
MSX2P35548 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 AC005294.1-201ENST00000355509 281 ntBASIC4.95□□□□□ -1.62
MSX2P35548 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 Y_RNA.573-201ENST00000384763 105 ntBASIC4.95□□□□□ -1.62
MSX2P35548 RPS3AP36-201ENST00000398190 775 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 AC007738.1-201ENST00000413892 348 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX2P35548 AC083875.1-201ENST00000419509 405 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms