Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 AC023813.2-201ENST00000564321 469 ntBASIC4.16□□□□□ -1.74
MSH3P20585 HNRNPCP4-201ENST00000571636 900 ntBASIC4.16□□□□□ -1.74
MSH3P20585 MTND4LP24-201ENST00000572277 291 ntBASIC4.16□□□□□ -1.74
MSH3P20585 MTND3P13-201ENST00000574391 343 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 AP001542.2-201ENST00000593141 364 ntBASIC4.16□□□□□ -1.74
MSH3P20585 VN1R88P-201ENST00000596787 292 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC016877.3-201ENST00000606778 504 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC092106.3-201ENST00000611308 722 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC005962.2-201ENST00000611427 652 ntBASIC4.16□□□□□ -1.74
MSH3P20585 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 MIR6716-201ENST00000613413 80 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AL445567.2-201ENST00000618935 498 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC013470.4-201ENST00000619978 986 ntBASIC4.16□□□□□ -1.74
MSH3P20585 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
MSH3P20585 AC068057.2-201ENST00000624047 895 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC008785.1-201ENST00000624475 456 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.15□□□□□ -1.74
MSH3P20585 LARP1BP1-201ENST00000506036 1359 ntBASIC4.15□□□□□ -1.74
MSH3P20585 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
MSH3P20585 AL049555.1-201ENST00000562834 1933 ntBASIC4.15□□□□□ -1.74
MSH3P20585 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.74
MSH3P20585 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.15□□□□□ -1.74
MSH3P20585 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
MSH3P20585 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
MSH3P20585 RNA5SP513-201ENST00000364648 118 ntBASIC4.15□□□□□ -1.75
MSH3P20585 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
MSH3P20585 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
MSH3P20585 AL049693.1-201ENST00000402760 611 ntBASIC4.15□□□□□ -1.75
MSH3P20585 RNU6-77P-201ENST00000410554 91 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AC114814.2-201ENST00000419195 485 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.15□□□□□ -1.75
MSH3P20585 RPF2P1-201ENST00000424137 906 ntBASIC4.15□□□□□ -1.75
MSH3P20585 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.15□□□□□ -1.75
MSH3P20585 RWDD4P2-201ENST00000426392 563 ntBASIC4.15□□□□□ -1.75
MSH3P20585 NANOGP6-201ENST00000429190 847 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.15□□□□□ -1.75
MSH3P20585 AL031663.1-201ENST00000437445 219 ntBASIC4.15□□□□□ -1.75
MSH3P20585 ELOCP8-201ENST00000439309 332 ntBASIC4.15□□□□□ -1.75
MSH3P20585 ELOCP15-201ENST00000442090 332 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.15□□□□□ -1.75
MSH3P20585 AC239809.1-201ENST00000450470 217 ntBASIC4.15□□□□□ -1.75
MSH3P20585 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
MSH3P20585 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.15□□□□□ -1.75
MSH3P20585 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.15□□□□□ -1.75
MSH3P20585 AC099522.1-202ENST00000514718 367 ntBASIC4.15□□□□□ -1.75
MSH3P20585 HNRNPKP5-201ENST00000515300 253 ntBASIC4.15□□□□□ -1.75
MSH3P20585 RN7SKP122-201ENST00000515923 296 ntBASIC4.15□□□□□ -1.75
MSH3P20585 RNU6-416P-201ENST00000516265 103 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.15□□□□□ -1.75
MSH3P20585 AP003730.1-201ENST00000524605 285 ntBASIC4.15□□□□□ -1.75
MSH3P20585 CYCSP29-201ENST00000533731 318 ntBASIC4.15□□□□□ -1.75
MSH3P20585 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.15□□□□□ -1.75
MSH3P20585 AC023050.2-201ENST00000544968 387 ntBASIC4.15□□□□□ -1.75
MSH3P20585 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.15□□□□□ -1.75
MSH3P20585 AC063950.1-201ENST00000552036 308 ntBASIC4.15□□□□□ -1.75
MSH3P20585 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.15□□□□□ -1.75
MSH3P20585 AC069366.1-201ENST00000583159 838 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AC061975.8-201ENST00000587058 721 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AL392112.1-201ENST00000605115 829 ntBASIC4.15□□□□□ -1.75
MSH3P20585 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.15□□□□□ -1.75
MSH3P20585 AL158163.2-201ENST00000619110 700 ntBASIC4.15□□□□□ -1.75
MSH3P20585 MIR8059-201ENST00000620427 81 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AC067852.7-201ENST00000623270 535 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AC120349.3-201ENST00000624377 529 ntBASIC4.15□□□□□ -1.75
MSH3P20585 AC092608.3-201ENST00000625017 386 ntBASIC4.15□□□□□ -1.75
MSH3P20585 MTND2P41-201ENST00000637599 773 ntBASIC4.15□□□□□ -1.75
MSH3P20585 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.15□□□□□ -1.75
MSH3P20585 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.75
MSH3P20585 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
MSH3P20585 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.15□□□□□ -1.75
MSH3P20585 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
MSH3P20585 AC114546.3-201ENST00000623582 1734 ntBASIC4.15□□□□□ -1.75
MSH3P20585 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.14□□□□□ -1.75
MSH3P20585 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 AC000367.1-201ENST00000452711 1766 ntBASIC4.14□□□□□ -1.75
MSH3P20585 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 AC092162.3-201ENST00000624511 1624 ntBASIC4.14□□□□□ -1.75
MSH3P20585 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
MSH3P20585 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.14□□□□□ -1.75
MSH3P20585 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
MSH3P20585 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 SNORA40.2-201ENST00000390847 128 ntBASIC4.14□□□□□ -1.75
MSH3P20585 AC119751.3-201ENST00000399720 670 ntBASIC4.14□□□□□ -1.75
MSH3P20585 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSH3P20585 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms