Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.24□□□□□ -1.89
COL6A3P12111 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 RPL7P26-201ENST00000333817 754 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 Y_RNA.140-201ENST00000363474 103 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AL662791.1-201ENST00000441992 928 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC112492.1-201ENST00000449607 712 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 ZNF72P-201ENST00000425869 1908 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 DMD-211ENST00000378707 7410 ntTSL 5 BASIC3.24□□□□□ -1.89
COL6A3P12111 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 SNORA71.1-201ENST00000364523 117 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.24□□□□□ -1.89
COL6A3P12111 AC004448.2-201ENST00000422360 586 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC005008.1-201ENST00000456151 612 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 USP9YP2-201ENST00000504503 1000 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC3.24□□□□□ -1.89
COL6A3P12111 BTG4P1-201ENST00000510421 183 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.24□□□□□ -1.89
COL6A3P12111 USP9YP1-201ENST00000513521 1002 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 RFPL4AP3-201ENST00000515267 345 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.24□□□□□ -1.89
COL6A3P12111 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.24□□□□□ -1.89
COL6A3P12111 KLKP1-201ENST00000595979 403 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC020914.4-201ENST00000597690 277 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.24□□□□□ -1.89
COL6A3P12111 AL353997.5-201ENST00000618886 171 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.23□□□□□ -1.89
COL6A3P12111 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.23□□□□□ -1.89
COL6A3P12111 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A3P12111 AC008280.2-201ENST00000455473 307 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 AC055855.1-201ENST00000489563 579 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 DEFB109F-201ENST00000491870 277 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.23□□□□□ -1.89
COL6A3P12111 AC096947.1-201ENST00000603233 470 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 uc_338.25-201ENST00000613756 156 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 MIR6817-201ENST00000615588 66 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 AC105074.1-201ENST00000623380 3095 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.23□□□□□ -1.89
COL6A3P12111 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A3P12111 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.23□□□□□ -1.89
COL6A3P12111 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
COL6A3P12111 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A3P12111 RN7SKP223-201ENST00000410582 62 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 HIGD1AP12-201ENST00000427832 281 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 RPS4XP2-201ENST00000458402 793 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 snoU13.18-201ENST00000459483 104 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.23□□□□□ -1.89
COL6A3P12111 AL365400.2-201ENST00000605604 902 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A3P12111 AC092435.3-201ENST00000565538 3654 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 NEAT1-202ENST00000501122 22743 ntBASIC3.23□□□□□ -1.89
COL6A3P12111 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A3P12111 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
COL6A3P12111 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.22□□□□□ -1.89
COL6A3P12111 AL592148.1-201ENST00000413568 445 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A3P12111 FTLP19-201ENST00000433300 394 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 TRBV12-2-201ENST00000489763 344 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.22□□□□□ -1.89
COL6A3P12111 CYP4A43P-201ENST00000568156 121 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.22□□□□□ -1.89
COL6A3P12111 AL353600.1-201ENST00000608148 251 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC138965.3-201ENST00000623875 498 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A3P12111 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.22□□□□□ -1.89
COL6A3P12111 RN7SL585P-201ENST00000470538 280 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC005351.1-201ENST00000511152 786 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC3.22□□□□□ -1.89
COL6A3P12111 DUXAP6-201ENST00000553858 601 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC233702.9-201ENST00000581528 203 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AP000942.3-201ENST00000603702 160 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.22□□□□□ -1.89
COL6A3P12111 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
COL6A3P12111 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A3P12111 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A3P12111 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.22□□□□□ -1.89
COL6A3P12111 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A3P12111 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.22□□□□□ -1.89
COL6A3P12111 RNA5SP68-201ENST00000363885 119 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.22□□□□□ -1.89
COL6A3P12111 GEMIN8P3-201ENST00000445417 720 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 RN7SL594P-201ENST00000470590 287 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC083906.5-201ENST00000503722 328 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.22□□□□□ -1.89
COL6A3P12111 AC024153.1-201ENST00000603103 365 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 AC123768.4-201ENST00000616244 701 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 CEP170P1-201ENST00000502249 4587 ntBASIC3.22□□□□□ -1.89
COL6A3P12111 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A3P12111 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms