Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL6A1P12109 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
COL6A1P12109 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 AL031119.1-201ENST00000404707 1879 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
COL6A1P12109 MIR133A2-201ENST00000347538 102 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 SNORA48.4-201ENST00000391089 134 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 SNORA57.1-201ENST00000391227 145 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL6A1P12109 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A1P12109 AC245052.5-201ENST00000416320 649 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 TXNP5-201ENST00000441043 315 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 RPS26P30-201ENST00000443431 335 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 SLC25A18P1-201ENST00000449385 454 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 DNAJC19P8-201ENST00000452887 259 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 MTND2P24-201ENST00000453434 806 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 RPL23AP71-201ENST00000470966 469 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC013356.1-201ENST00000489027 564 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 SETP14-201ENST00000497538 873 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 AC025674.1-201ENST00000507074 324 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC026402.1-201ENST00000513642 170 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 HMGN1P9-201ENST00000515212 298 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 RNU6-718P-201ENST00000516166 105 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 IGJP1-201ENST00000522682 475 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC012339.2-201ENST00000523996 453 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.57□□□□□ -1.52
COL6A1P12109 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A1P12109 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC5.57□□□□□ -1.52
COL6A1P12109 ADI1P3-201ENST00000549509 470 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 AL121579.1-201ENST00000555129 305 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A1P12109 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.57□□□□□ -1.52
COL6A1P12109 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A1P12109 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.57□□□□□ -1.52
COL6A1P12109 AL390816.3-201ENST00000604527 1066 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AL022154.1-201ENST00000604698 785 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 AL159169.3-201ENST00000608871 561 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.57□□□□□ -1.52
COL6A1P12109 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 AL079343.1-201ENST00000572358 1771 ntBASIC5.57□□□□□ -1.52
COL6A1P12109 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A1P12109 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A1P12109 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.57□□□□□ -1.52
COL6A1P12109 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A1P12109 IQCB2P-201ENST00000401788 1633 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL6A1P12109 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 MIR589-201ENST00000385238 99 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 SNORA48.7-201ENST00000391302 135 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A1P12109 PIGPP2-201ENST00000411569 458 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 RSU1P3-201ENST00000412878 835 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AP001324.1-201ENST00000428553 399 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC098614.3-201ENST00000438957 440 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 ACTR3P2-201ENST00000439585 1257 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC003071.1-201ENST00000451219 789 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 OR9M1P-201ENST00000459641 921 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 RPS4XP12-201ENST00000461747 709 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 RN7SL443P-201ENST00000464331 290 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 IGBP1P4-201ENST00000503202 879 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 KRT19P6-201ENST00000510983 209 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 RNA5SP464-201ENST00000516251 108 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC136777.2-201ENST00000522979 358 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.56□□□□□ -1.52
COL6A1P12109 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 AL109766.1-201ENST00000555080 552 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms