Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SDC3O75056 U8.11-201ENST00000384699 133 ntBASIC3.88□□□□□ -1.79
SDC3O75056 U8.12-201ENST00000384701 133 ntBASIC3.88□□□□□ -1.79
SDC3O75056 HMGB3P19-201ENST00000403971 560 ntBASIC3.88□□□□□ -1.79
SDC3O75056 ZNF603P-201ENST00000405613 487 ntBASIC3.88□□□□□ -1.79
SDC3O75056 RPL31P45-201ENST00000419532 356 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC091286.1-201ENST00000431233 461 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC3O75056 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC3O75056 U8.18-201ENST00000459285 133 ntBASIC3.88□□□□□ -1.79
SDC3O75056 RPS20P21-201ENST00000466859 343 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC104689.1-201ENST00000473356 768 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC073522.1-201ENST00000483312 377 ntBASIC3.88□□□□□ -1.79
SDC3O75056 RPS26P15-201ENST00000488067 348 ntBASIC3.88□□□□□ -1.79
SDC3O75056 OR5H3P-201ENST00000502817 919 ntBASIC3.88□□□□□ -1.79
SDC3O75056 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.88□□□□□ -1.79
SDC3O75056 RN7SKP96-201ENST00000516948 297 ntBASIC3.88□□□□□ -1.79
SDC3O75056 PAICSP4-201ENST00000517543 1253 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC3O75056 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC3O75056 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC3O75056 AC107016.1-201ENST00000550463 337 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC3O75056 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC3O75056 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.88□□□□□ -1.79
SDC3O75056 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC3O75056 SNORA51-201ENST00000606420 132 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC073569.3-201ENST00000619055 682 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC012314.7-201ENST00000619693 93 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AC006249.1-201ENST00000621223 471 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AL359715.5-201ENST00000623431 443 ntBASIC3.88□□□□□ -1.79
SDC3O75056 AL034408.1-202ENST00000636088 415 ntBASIC3.88□□□□□ -1.79
SDC3O75056 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SDC3O75056 ZNF33CP-201ENST00000432492 2030 ntBASIC3.88□□□□□ -1.79
SDC3O75056 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SDC3O75056 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SDC3O75056 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
SDC3O75056 AC097504.1-201ENST00000515103 2415 ntBASIC3.87□□□□□ -1.79
SDC3O75056 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
SDC3O75056 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 AL445183.3-201ENST00000414168 502 ntBASIC3.87□□□□□ -1.79
SDC3O75056 NUP35P2-201ENST00000416748 943 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.87□□□□□ -1.79
SDC3O75056 OR4F13P-201ENST00000428478 931 ntBASIC3.87□□□□□ -1.79
SDC3O75056 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.87□□□□□ -1.79
SDC3O75056 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC3O75056 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC3O75056 MRPL35P4-201ENST00000453682 566 ntBASIC3.87□□□□□ -1.79
SDC3O75056 SNORD108-201ENST00000459332 71 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC018635.1-201ENST00000468292 1030 ntBASIC3.87□□□□□ -1.79
SDC3O75056 RPL21P103-201ENST00000479921 488 ntBASIC3.87□□□□□ -1.79
SDC3O75056 RPS3AP6-201ENST00000484430 795 ntBASIC3.87□□□□□ -1.79
SDC3O75056 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 AC104108.1-201ENST00000509930 412 ntBASIC3.87□□□□□ -1.79
SDC3O75056 RN7SKP234-201ENST00000517173 224 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC3O75056 NDUFA5P2-201ENST00000519723 344 ntBASIC3.87□□□□□ -1.79
SDC3O75056 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.87□□□□□ -1.79
SDC3O75056 RFPL1S-203ENST00000539579 330 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AP003717.3-201ENST00000544832 1180 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.87□□□□□ -1.79
SDC3O75056 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.87□□□□□ -1.79
SDC3O75056 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 AC021851.1-201ENST00000608537 1082 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC112503.2-201ENST00000609005 552 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC105429.2-201ENST00000610567 517 ntBASIC3.87□□□□□ -1.79
SDC3O75056 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 AC005344.1-201ENST00000613391 459 ntBASIC3.87□□□□□ -1.79
SDC3O75056 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 AC233309.1-201ENST00000619522 751 ntBASIC3.87□□□□□ -1.79
SDC3O75056 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 MIR7702-201ENST00000621931 59 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC068880.4-201ENST00000623082 495 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AP005264.7-201ENST00000625003 745 ntBASIC3.87□□□□□ -1.79
SDC3O75056 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 AC132825.7-201ENST00000638744 335 ntBASIC3.87□□□□□ -1.79
SDC3O75056 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.87□□□□□ -1.79
SDC3O75056 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 AL627171.1-201ENST00000618845 1308 ntBASIC3.87□□□□□ -1.79
SDC3O75056 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 MAPK10-253ENST00000641010 4072 ntBASIC3.87□□□□□ -1.79
SDC3O75056 AC018555.1-201ENST00000567548 1980 ntBASIC3.87□□□□□ -1.79
SDC3O75056 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SDC3O75056 AP004289.2-201ENST00000444413 1457 ntBASIC3.86□□□□□ -1.79
SDC3O75056 LINC02471-203ENST00000641941 4752 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms