Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR1244-1-201ENST00000612829 85 ntBASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 AL590240.4-201ENST00000616908 390 ntBASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 TEX41-280ENST00000629185 591 ntTSL 5 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 MIR1244-3-201ENST00000635744 85 ntBASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 MIR1244-2-201ENST00000636449 85 ntBASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 MIR1244-4-202ENST00000636813 85 ntBASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 AC034111.1-201ENST00000562143 3770 ntBASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
VPS9D1Q9Y2B5 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC005839.1-201ENST00000624148 3213 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 Y_RNA.497-201ENST00000384447 98 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 MIR541-201ENST00000401360 84 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 RNU6ATAC15P-201ENST00000408279 121 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AL445928.1-201ENST00000435545 222 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 PRDX3P3-201ENST00000447765 522 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AL133351.3-201ENST00000454998 193 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 RPL23AP8-201ENST00000479812 475 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 RPL7AP10-201ENST00000481016 791 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 RBBP4P6-201ENST00000508098 202 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 RNU2-69P-201ENST00000516061 100 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 Y_RNA.687-201ENST00000516558 91 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 SCARNA18.2-201ENST00000516882 84 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 CYCSP22-201ENST00000517555 339 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AP001803.1-201ENST00000525668 147 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 MRPS18CP4-201ENST00000535821 231 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC089984.3-201ENST00000552838 363 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 SNORA70D-201ENST00000578836 135 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC023813.4-201ENST00000607580 580 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AL031777.2-201ENST00000611953 196 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 MIR376A1-201ENST00000616574 68 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 AC011471.4-201ENST00000638271 216 ntBASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
VPS9D1Q9Y2B5 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AC007993.1-201ENST00000621298 2430 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RN7SKP118-201ENST00000364331 330 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RNU6-1303P-201ENST00000364841 107 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 Y_RNA.343-201ENST00000365354 112 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RNA5SP53-201ENST00000391299 120 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RNA5SP231-201ENST00000410496 138 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 ATP5LP4-201ENST00000434169 307 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RPL23AP60-201ENST00000450011 454 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RNU7-59P-201ENST00000459101 61 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 RPL23AP55-201ENST00000498163 452 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 YWHAEP4-201ENST00000505390 198 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 IGLVV-66-201ENST00000523818 341 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 AC009643.1-201ENST00000532030 391 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 DPPA3P2-201ENST00000553589 478 ntBASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC6.94□□□□□ -1.3
VPS9D1Q9Y2B5 MIR1273F-201ENST00000580581 99 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms