Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC006338.2-201ENST00000616864 791 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC010975.3-201ENST00000618727 978 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC140479.6-201ENST00000633535 357 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC026634.1-201ENST00000634369 198 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 MIR6830-201ENST00000636015 70 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL356489.2-201ENST00000566968 3528 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 RNA5SP307-201ENST00000362863 116 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 RNU6-251P-201ENST00000363235 104 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 RHOT1P2-201ENST00000366423 333 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 RNU1-44P-201ENST00000384453 163 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 AL161909.1-201ENST00000397390 712 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 AL049693.1-201ENST00000402760 611 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 SNORA11F-201ENST00000408237 128 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 BOLA3P4-201ENST00000418151 400 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 HIGD1AP12-201ENST00000427832 281 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC005345.1-201ENST00000431868 217 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 RPL23AP52-201ENST00000439311 478 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC079776.3-201ENST00000450665 370 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 PRELID3BP7-201ENST00000503606 469 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC108145.1-201ENST00000503770 153 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 OR4A45P-201ENST00000529954 901 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 OR6C73P-201ENST00000546432 358 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 MIR4509-3-201ENST00000578671 94 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 MIR4509-2-201ENST00000583920 94 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 SNORD39.3-201ENST00000584451 71 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 IPO5P1-202ENST00000600039 287 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 ARF4P1-201ENST00000605447 541 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC005962.2-201ENST00000611427 652 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 MIR6798-201ENST00000612887 67 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 CYCSP41-201ENST00000616920 296 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 MIR4509-1-201ENST00000618224 94 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 Z99496.1-201ENST00000469424 1477 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
VPS28Q9UK41 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS28Q9UK41 AC068254.2-201ENST00000623938 3577 ntBASIC4.47□□□□□ -1.69
VPS28Q9UK41 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS28Q9UK41 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS28Q9UK41 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS28Q9UK41 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 RNU6-1300P-201ENST00000391046 108 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 OR6C69P-201ENST00000394268 893 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 RNA5SP104-201ENST00000410989 118 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS28Q9UK41 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AL132765.1-201ENST00000434165 553 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC069285.2-201ENST00000440210 275 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AL031313.1-201ENST00000448435 256 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 RPL35AP15-201ENST00000468042 339 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 MIR4697-201ENST00000582977 78 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AC010201.1-201ENST00000605051 540 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 AL365400.2-201ENST00000605604 902 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 NOL8P1-201ENST00000508336 3529 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS28Q9UK41 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms