Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 SNORD3E-201ENST00000362899 217 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 Y_RNA.252-201ENST00000364556 101 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 Y_RNA.364-201ENST00000365532 101 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 RNU6-328P-201ENST00000390887 106 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AL157702.1-201ENST00000398764 426 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 RPL7P46-201ENST00000425129 740 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 RPL12P17-201ENST00000432393 498 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 RPL35AP22-201ENST00000436855 335 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AL353691.1-201ENST00000451332 387 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 snoU13.7-201ENST00000459220 104 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 MTATP8P1-201ENST00000467115 207 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 PPIAP19-201ENST00000486414 492 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC097473.1-201ENST00000508142 408 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC104806.1-201ENST00000508720 308 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 IGKV1OR2-1-201ENST00000514060 354 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 RNU6-798P-201ENST00000516912 103 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC092470.1-201ENST00000546187 132 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 MYL12BP1-201ENST00000569826 507 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC005341.1-201ENST00000571086 708 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 MIR5583-1-201ENST00000580941 59 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 PRR13P7-201ENST00000605538 430 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC123768.4-201ENST00000616244 701 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AC103710.2-202ENST00000641454 2853 ntBASIC6.79□□□□□ -1.32
LIMD1Q9UGP4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 Y_RNA.80-201ENST00000362996 102 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 RNU6-960P-201ENST00000364056 120 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 RNU6-61P-201ENST00000365528 109 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 SNORA75B-201ENST00000384053 137 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 SNORA17A-201ENST00000391185 133 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AL049697.2-201ENST00000403708 294 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 Y_RNA.646-201ENST00000410980 101 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC079355.1-201ENST00000421770 223 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AL160004.2-201ENST00000432935 350 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 RPS4XP23-201ENST00000487801 237 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 RPL30P11-201ENST00000495304 339 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 PTP4A1P6-201ENST00000531034 478 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 MRPS21P8-201ENST00000569196 235 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AP003115.1-201ENST00000569849 463 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 TVP23CP2-201ENST00000571473 623 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 RN7SL208P-201ENST00000577964 296 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC024619.4-201ENST00000580924 316 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 AC092266.1-201ENST00000610958 165 ntBASIC6.78□□□□□ -1.32
LIMD1Q9UGP4 PISRT1.1-201ENST00000616930 107 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms