Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 DUXAP10-204ENST00000612052 616 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 MIR6862-1-201ENST00000613016 70 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 MIR6862-2-201ENST00000614755 70 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 MIR4509-1-201ENST00000618224 94 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 SNORA11.6-201ENST00000619030 128 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 C2orf27A-204ENST00000623058 969 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 AC015813.6-201ENST00000624409 5808 ntBASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC28BQ9BUN5 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AL137100.1-201ENST00000556703 1620 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 MIR105-2-201ENST00000385083 81 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AL049610.1-201ENST00000423374 372 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 RPS3AP54-201ENST00000435535 734 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 RPL7P29-201ENST00000437151 728 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AP000893.1-201ENST00000474462 794 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 RN7SL826P-201ENST00000479724 288 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AK3P4-201ENST00000504283 583 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 PCBP2P3-201ENST00000509726 843 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC108471.1-201ENST00000513977 287 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 RN7SKP83-201ENST00000516512 178 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 RN7SKP92-201ENST00000517266 244 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 HMGB1P1-201ENST00000522557 636 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AP001372.4-201ENST00000524889 472 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC095057.3-201ENST00000567102 1157 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 MIR4458-201ENST00000578872 75 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC125494.3-201ENST00000602759 455 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC005191.1-201ENST00000603950 358 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AL049634.3-201ENST00000604968 457 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC090525.3-201ENST00000605601 189 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 CYCSP41-201ENST00000616920 296 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 AC091905.1-201ENST00000624400 311 ntBASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28BQ9BUN5 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL161909.1-201ENST00000397390 712 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 HMGB3P18-201ENST00000406327 590 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 LINC01881-201ENST00000416103 412 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RPS15AP6-201ENST00000420703 385 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AC092170.1-201ENST00000440211 356 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL358794.1-201ENST00000445689 381 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 OR51B8P-201ENST00000449892 769 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 CEACAMP4-201ENST00000457676 421 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RPL6P9-201ENST00000466502 859 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RPS4XP6-201ENST00000477670 797 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RPL23AP44-201ENST00000482216 473 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 RN7SL604P-201ENST00000492589 296 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 MTND2P32-201ENST00000521584 1038 ntBASIC3.81□□□□□ -1.8
CCDC28BQ9BUN5 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms