Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC084824.1-201ENST00000550917 1005 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 AL442163.2-201ENST00000553912 710 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC245100.7-201ENST00000609678 442 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC018926.3-201ENST00000618841 406 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC006213.5-201ENST00000619673 288 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC017104.5-201ENST00000637647 639 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS35Q96QK1 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS35Q96QK1 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS35Q96QK1 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS35Q96QK1 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS35Q96QK1 RPS4XP5-202ENST00000449995 1334 ntBASIC3.89□□□□□ -1.79
VPS35Q96QK1 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS35Q96QK1 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS35Q96QK1 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS35Q96QK1 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC025125.1-201ENST00000624743 1922 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS35Q96QK1 MIR16-2-201ENST00000362117 81 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 RNU6-1339P-201ENST00000363574 91 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 RNA5SP97-201ENST00000365006 84 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 MIR199A2-201ENST00000385289 110 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS35Q96QK1 PRRC2CP1-201ENST00000404428 159 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AL356967.1-201ENST00000406305 431 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 USP9YP19-201ENST00000412165 485 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AL606495.1-201ENST00000422100 813 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 OR5AW1P-201ENST00000426334 1006 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 RPL17P35-201ENST00000432217 549 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 KCTD9P3-201ENST00000434597 1169 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC096638.2-201ENST00000434965 711 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 FABP5P3-201ENST00000437960 408 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 RPL21P133-201ENST00000443666 476 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 RPL7P55-201ENST00000450522 746 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 DNAJC19P8-201ENST00000452887 259 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC018635.1-201ENST00000468292 1030 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 RPS4XP15-201ENST00000489210 795 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 RPL7P24-201ENST00000493052 752 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 RPL7L1P13-201ENST00000511702 739 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 RN7SL703P-201ENST00000578485 302 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC005255.1-201ENST00000593748 216 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC096586.1-201ENST00000610267 561 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AL591424.2-201ENST00000617023 128 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AL713922.2-201ENST00000619384 716 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 U7.8-201ENST00000619968 63 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC020923.1-201ENST00000624021 917 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC092608.3-201ENST00000625017 386 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS35Q96QK1 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS35Q96QK1 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS35Q96QK1 MTCO1P14-201ENST00000441695 1559 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
VPS35Q96QK1 AC046144.1-201ENST00000478559 1853 ntBASIC3.88□□□□□ -1.79
VPS35Q96QK1 MAPK10-373ENST00000641983 6772 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 ASNSP1-204ENST00000641977 1664 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS35Q96QK1 OTUD4P1-201ENST00000237841 3067 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS35Q96QK1 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 XPOTP1-201ENST00000443317 2398 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AL512646.1-201ENST00000269395 1077 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 ATP5F1P6-201ENST00000402768 767 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AL445183.3-201ENST00000414168 502 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 NUP35P2-201ENST00000416748 943 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC008173.1-201ENST00000418901 264 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AF228730.2-201ENST00000438784 848 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 UBE2V1P5-201ENST00000440070 405 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC009263.1-201ENST00000441193 1239 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 RPL7P47-201ENST00000497299 556 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AC104108.1-201ENST00000509930 412 ntBASIC3.87□□□□□ -1.79
VPS35Q96QK1 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS35Q96QK1 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms