Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CYCSP40-201ENST00000575927 294 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC245036.5-201ENST00000596330 847 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 BNIP3P26-201ENST00000600827 554 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AL390838.2-201ENST00000602394 274 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AL121932.1-201ENST00000605542 214 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 Z99289.3-201ENST00000605586 594 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC092106.3-201ENST00000611308 722 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC107081.3-201ENST00000612715 2034 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 DDX18P5-201ENST00000534547 1306 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AL592182.3-201ENST00000642132 3304 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC025125.1-201ENST00000624743 1922 ntBASIC4.4□□□□□ -1.7
COL28A1Q2UY09 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC016716.1-201ENST00000265882 708 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC011155.1-201ENST00000316512 456 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 SUGT1P1-201ENST00000379514 476 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RNU6-1300P-201ENST00000391046 108 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL161909.1-201ENST00000397390 712 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL121978.1-201ENST00000402778 359 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RN7SKP159-201ENST00000410657 292 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 MRPS36P1-201ENST00000421291 307 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC009237.2-201ENST00000421358 284 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 EIF4EP1-201ENST00000422311 642 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL513175.1-201ENST00000431492 780 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 SEPT7P5-201ENST00000434048 306 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RPS17P8-201ENST00000434525 335 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL451139.1-201ENST00000434718 346 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RPS3AP54-201ENST00000435535 734 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RPS26P2-201ENST00000440331 348 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RPL23AP93-201ENST00000440847 484 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 MTCO2P25-201ENST00000447065 681 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 SNORA59A-201ENST00000459326 152 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 MTCO2P6-201ENST00000463134 685 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC108734.3-201ENST00000481241 1165 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RN7SL810P-201ENST00000493031 276 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC011352.3-201ENST00000505162 593 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 PARP4P3-201ENST00000510265 317 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 NBEAP1-201ENST00000554452 979 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RPL21P7-201ENST00000557463 483 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 MRPS35P3-201ENST00000603189 709 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AC069304.3-201ENST00000603938 1084 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL354760.1-201ENST00000608357 643 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL158196.1-201ENST00000616786 434 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 AL356121.2-201ENST00000624715 780 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 MIR3653-201ENST00000625572 110 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 ZNF876P-202ENST00000398732 1485 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 Z99496.1-201ENST00000469424 1477 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.4□□□□□ -1.71
COL28A1Q2UY09 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL28A1Q2UY09 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 ASNSP1-201ENST00000518311 1939 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RNU6-1066P-201ENST00000363573 105 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RNU6-115P-201ENST00000364310 107 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RNU6-444P-201ENST00000383988 108 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 MTND4P13-201ENST00000402078 1023 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms