Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC008752.3-201ENST00000588113 712 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 AC060780.3-201ENST00000589464 80 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 AC078795.3-201ENST00000602913 472 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC112191.3-201ENST00000604371 277 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AL590282.1-201ENST00000610379 1136 ntBASIC4.98□□□□□ -1.61
MSX2P35548 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 AL020991.1-201ENST00000612314 373 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC243654.2-201ENST00000612843 443 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AP003122.6-201ENST00000623831 495 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AP001642.1-201ENST00000624727 2117 ntBASIC4.98□□□□□ -1.61
MSX2P35548 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.97□□□□□ -1.61
MSX2P35548 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 LINC00561-201ENST00000565815 2738 ntBASIC4.97□□□□□ -1.61
MSX2P35548 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX2P35548 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX2P35548 Y_RNA.89-201ENST00000363031 102 ntBASIC4.97□□□□□ -1.61
MSX2P35548 RNU6-1122P-201ENST00000384449 107 ntBASIC4.97□□□□□ -1.61
MSX2P35548 Y_RNA.509-201ENST00000384506 99 ntBASIC4.97□□□□□ -1.61
MSX2P35548 Y_RNA.535-201ENST00000384612 99 ntBASIC4.97□□□□□ -1.61
MSX2P35548 U8.14-201ENST00000390843 143 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC004386.1-201ENST00000393214 761 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AL035079.1-201ENST00000405210 287 ntBASIC4.97□□□□□ -1.61
MSX2P35548 RPS3AP3-201ENST00000411933 242 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.97□□□□□ -1.61
MSX2P35548 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 RPL6P29-201ENST00000414863 865 ntBASIC4.97□□□□□ -1.61
MSX2P35548 FCF1P2-201ENST00000415284 583 ntBASIC4.97□□□□□ -1.61
MSX2P35548 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX2P35548 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 NIPA2P1-201ENST00000426223 976 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AL158073.1-201ENST00000426848 1104 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 ZYG11AP1-201ENST00000430329 837 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 BX842559.2-201ENST00000451418 605 ntBASIC4.97□□□□□ -1.61
MSX2P35548 RPS3AP14-201ENST00000483907 780 ntBASIC4.97□□□□□ -1.61
MSX2P35548 RNF138P1-201ENST00000502765 546 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.97□□□□□ -1.61
MSX2P35548 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 AC021678.1-201ENST00000505195 936 ntBASIC4.97□□□□□ -1.61
MSX2P35548 HMGB3P16-201ENST00000508037 287 ntBASIC4.97□□□□□ -1.61
MSX2P35548 SAP18P1-201ENST00000512058 390 ntBASIC4.97□□□□□ -1.61
MSX2P35548 KCTD9P2-201ENST00000512203 1013 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 AC025465.4-201ENST00000513422 638 ntBASIC4.97□□□□□ -1.61
MSX2P35548 RNU6-583P-201ENST00000516012 92 ntBASIC4.97□□□□□ -1.61
MSX2P35548 RNU6-615P-201ENST00000516065 106 ntBASIC4.97□□□□□ -1.61
MSX2P35548 SNORA48.10-201ENST00000516965 160 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.97□□□□□ -1.61
MSX2P35548 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 AC022878.1-201ENST00000530684 149 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX2P35548 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.97□□□□□ -1.61
MSX2P35548 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 AC123786.2-201ENST00000603459 275 ntBASIC4.97□□□□□ -1.61
MSX2P35548 PRELID3BP8-201ENST00000604148 295 ntBASIC4.97□□□□□ -1.61
MSX2P35548 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 AC103710.4-201ENST00000609301 899 ntBASIC4.97□□□□□ -1.61
MSX2P35548 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 MLECP1-201ENST00000615893 709 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AL118522.2-201ENST00000616045 615 ntBASIC4.97□□□□□ -1.61
MSX2P35548 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.97□□□□□ -1.61
MSX2P35548 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX2P35548 AC015871.5-202ENST00000623252 701 ntBASIC4.97□□□□□ -1.61
MSX2P35548 AC009033.1-201ENST00000624279 431 ntBASIC4.97□□□□□ -1.61
MSX2P35548 FER-210ENST00000628534 558 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 SALL4P2-201ENST00000423288 2910 ntBASIC4.97□□□□□ -1.61
MSX2P35548 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSX2P35548 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX2P35548 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX2P35548 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
MSX2P35548 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX2P35548 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms