Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL671309.1-201ENST00000603750 544 ntBASIC3.67□□□□□ -1.82
SHMT2P34897 AC007423.1-201ENST00000605009 627 ntBASIC3.67□□□□□ -1.82
SHMT2P34897 AL355816.1-201ENST00000607951 118 ntBASIC3.67□□□□□ -1.82
SHMT2P34897 U7.8-201ENST00000619968 63 ntBASIC3.67□□□□□ -1.82
SHMT2P34897 AC073592.7-201ENST00000623659 507 ntBASIC3.67□□□□□ -1.82
SHMT2P34897 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.67□□□□□ -1.82
SHMT2P34897 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.67□□□□□ -1.82
SHMT2P34897 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SHMT2P34897 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SHMT2P34897 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.67□□□□□ -1.82
SHMT2P34897 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.67□□□□□ -1.82
SHMT2P34897 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.66□□□□□ -1.82
SHMT2P34897 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.66□□□□□ -1.82
SHMT2P34897 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.66□□□□□ -1.82
SHMT2P34897 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.66□□□□□ -1.82
SHMT2P34897 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 AL118496.1-201ENST00000440201 1812 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 EXOC5P1-201ENST00000510543 1969 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 HSPE1P8-201ENST00000406997 288 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 USP9YP19-201ENST00000412165 485 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.66□□□□□ -1.82
SHMT2P34897 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.66□□□□□ -1.82
SHMT2P34897 AC122718.1-201ENST00000439448 744 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC006480.1-201ENST00000449887 378 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.66□□□□□ -1.82
SHMT2P34897 FAM133DP-201ENST00000464802 691 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.66□□□□□ -1.82
SHMT2P34897 RAC1P2-201ENST00000511164 579 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 NDUFB4P9-201ENST00000511646 388 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.66□□□□□ -1.82
SHMT2P34897 SNORA76.2-201ENST00000517095 137 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 SUMO2P20-201ENST00000520803 283 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AP003168.1-201ENST00000530091 307 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC091515.1-201ENST00000548110 679 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.66□□□□□ -1.82
SHMT2P34897 AC025918.2-201ENST00000558683 763 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.66□□□□□ -1.82
SHMT2P34897 AC115085.1-201ENST00000588924 229 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.66□□□□□ -1.82
SHMT2P34897 AP003117.1-201ENST00000602771 554 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC079610.2-201ENST00000604818 690 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC110741.2-201ENST00000605278 268 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AL034351.1-201ENST00000605288 668 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 SNORA62.6-201ENST00000606322 83 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 AC006946.3-201ENST00000609791 756 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SHMT2P34897 AL356863.1-201ENST00000623378 1080 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.66□□□□□ -1.82
SHMT2P34897 TNPO1P3-201ENST00000436471 2662 ntBASIC3.66□□□□□ -1.82
SHMT2P34897 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SHMT2P34897 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SHMT2P34897 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
SHMT2P34897 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.65□□□□□ -1.82
SHMT2P34897 AL353743.4-201ENST00000422653 1547 ntBASIC3.65□□□□□ -1.82
SHMT2P34897 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
SHMT2P34897 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
SHMT2P34897 SNORD6-201ENST00000365444 73 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 MIR142-201ENST00000384835 87 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 MIR134-201ENST00000385258 73 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 TCEA1P2-201ENST00000420496 906 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AC002075.2-201ENST00000425207 252 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AL138785.1-201ENST00000425821 331 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 HIGD1AP12-201ENST00000427832 281 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 FTH1P6-201ENST00000430768 320 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AL035246.1-201ENST00000433554 1255 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AL590762.3-201ENST00000436372 640 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 RPL7P29-201ENST00000437151 728 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.65□□□□□ -1.83
SHMT2P34897 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.65□□□□□ -1.83
SHMT2P34897 NOTCH2P1-201ENST00000443481 624 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 CDC27P1-201ENST00000445384 715 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SHMT2P34897 NANOGP10-201ENST00000453325 895 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.65□□□□□ -1.83
SHMT2P34897 RPL7P15-201ENST00000461190 712 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AC087385.1-201ENST00000475062 312 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AC104687.1-201ENST00000485829 412 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 USP9YP5-201ENST00000511770 630 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.65□□□□□ -1.83
SHMT2P34897 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.65□□□□□ -1.83
SHMT2P34897 RNU1-45P-201ENST00000517191 141 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.65□□□□□ -1.83
SHMT2P34897 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.65□□□□□ -1.83
SHMT2P34897 MED28P5-201ENST00000528254 438 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.65□□□□□ -1.83
SHMT2P34897 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.65□□□□□ -1.83
SHMT2P34897 AGGF1P8-201ENST00000562979 1000 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.65□□□□□ -1.83
SHMT2P34897 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.65□□□□□ -1.83
SHMT2P34897 MTND4LP24-201ENST00000572277 291 ntBASIC3.65□□□□□ -1.83
SHMT2P34897 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.65□□□□□ -1.83
SHMT2P34897 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms