Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.81□□□□□ -1.64
CIITAP33076 RPS3AP22-201ENST00000488297 769 ntBASIC4.81□□□□□ -1.64
CIITAP33076 RPS27AP13-201ENST00000498403 237 ntBASIC4.81□□□□□ -1.64
CIITAP33076 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.81□□□□□ -1.64
CIITAP33076 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.81□□□□□ -1.64
CIITAP33076 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.81□□□□□ -1.64
CIITAP33076 SNORA3.4-201ENST00000515969 96 ntBASIC4.81□□□□□ -1.64
CIITAP33076 RNA5SP360-201ENST00000516555 118 ntBASIC4.81□□□□□ -1.64
CIITAP33076 AL356057.1-201ENST00000533798 831 ntBASIC4.81□□□□□ -1.64
CIITAP33076 PDCD5P1-201ENST00000543528 309 ntBASIC4.81□□□□□ -1.64
CIITAP33076 AC011477.5-201ENST00000586571 259 ntBASIC4.81□□□□□ -1.64
CIITAP33076 NF1P5-201ENST00000588287 448 ntBASIC4.81□□□□□ -1.64
CIITAP33076 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.81□□□□□ -1.64
CIITAP33076 AC018638.7-201ENST00000605836 1114 ntBASIC4.81□□□□□ -1.64
CIITAP33076 TUSC7.1-201ENST00000610969 165 ntBASIC4.81□□□□□ -1.64
CIITAP33076 MIR3974-201ENST00000637126 96 ntBASIC4.81□□□□□ -1.64
CIITAP33076 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CIITAP33076 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CIITAP33076 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CIITAP33076 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CIITAP33076 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AC138393.1-206ENST00000540997 1886 ntBASIC4.8□□□□□ -1.64
CIITAP33076 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 SKINT1L-201ENST00000401057 817 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AL049693.1-201ENST00000402760 611 ntBASIC4.8□□□□□ -1.64
CIITAP33076 VN1R8P-201ENST00000407739 893 ntBASIC4.8□□□□□ -1.64
CIITAP33076 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 RN7SKP182-201ENST00000410772 298 ntBASIC4.8□□□□□ -1.64
CIITAP33076 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 RPF2P1-201ENST00000424137 906 ntBASIC4.8□□□□□ -1.64
CIITAP33076 COX6CP15-201ENST00000426313 211 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AL357520.1-201ENST00000441557 453 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 AL133217.1-201ENST00000450980 425 ntBASIC4.8□□□□□ -1.64
CIITAP33076 NECAP1P2-201ENST00000455668 727 ntBASIC4.8□□□□□ -1.64
CIITAP33076 ATG12P2-201ENST00000456830 416 ntBASIC4.8□□□□□ -1.64
CIITAP33076 RNA5SP246-201ENST00000458909 119 ntBASIC4.8□□□□□ -1.64
CIITAP33076 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AC069528.1-202ENST00000482888 637 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC084024.2-201ENST00000503480 791 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AC118282.2-201ENST00000508739 374 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AC021146.3-201ENST00000511911 260 ntBASIC4.8□□□□□ -1.64
CIITAP33076 MRPS33P3-201ENST00000513456 322 ntBASIC4.8□□□□□ -1.64
CIITAP33076 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 TCP11X3P-202ENST00000514289 1254 ntBASIC4.8□□□□□ -1.64
CIITAP33076 SNORD116-26-201ENST00000516006 96 ntBASIC4.8□□□□□ -1.64
CIITAP33076 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 COX6B1P6-201ENST00000522347 255 ntBASIC4.8□□□□□ -1.64
CIITAP33076 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.8□□□□□ -1.64
CIITAP33076 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AC124068.1-201ENST00000563131 678 ntBASIC4.8□□□□□ -1.64
CIITAP33076 MIR4512-201ENST00000583257 77 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 AC115085.1-201ENST00000588924 229 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.8□□□□□ -1.64
CIITAP33076 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 VN1R74P-201ENST00000613259 503 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AC107075.1-201ENST00000613695 314 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AL392048.1-201ENST00000613946 534 ntBASIC4.8□□□□□ -1.64
CIITAP33076 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 AC000367.1-201ENST00000452711 1766 ntBASIC4.8□□□□□ -1.64
CIITAP33076 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.8□□□□□ -1.64
CIITAP33076 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CIITAP33076 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.8□□□□□ -1.64
CIITAP33076 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CIITAP33076 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.79□□□□□ -1.64
CIITAP33076 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.79□□□□□ -1.64
CIITAP33076 AC091046.3-201ENST00000631455 1574 ntBASIC4.79□□□□□ -1.64
CIITAP33076 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CIITAP33076 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.79□□□□□ -1.64
CIITAP33076 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CIITAP33076 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CIITAP33076 snoZ40.1-201ENST00000364540 72 ntBASIC4.79□□□□□ -1.64
CIITAP33076 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.79□□□□□ -1.64
CIITAP33076 SNORD116-1-201ENST00000384335 95 ntBASIC4.79□□□□□ -1.64
CIITAP33076 RNU6-575P-201ENST00000411326 105 ntBASIC4.79□□□□□ -1.64
CIITAP33076 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.79□□□□□ -1.64
CIITAP33076 AL161631.1-201ENST00000417933 486 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms