Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXC9P31274 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
HOXC9P31274 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC9P31274 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HOXC9P31274 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXC9P31274 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HOXC9P31274 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC9P31274 RNA5SP52-201ENST00000362448 134 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC234772.1-201ENST00000377927 937 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 RN7SKP177-201ENST00000410567 355 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 RNA5SP498-201ENST00000411342 120 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC9P31274 GNG5P5-201ENST00000420444 220 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC241520.1-201ENST00000422654 1099 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXC9P31274 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXC9P31274 RPL21P110-201ENST00000433345 446 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 MTCO1P52-201ENST00000433928 531 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC096638.2-201ENST00000434965 711 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 ELOCP8-201ENST00000439309 332 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 ELOCP15-201ENST00000442090 332 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC9P31274 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC9P31274 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC9P31274 AL096803.2-201ENST00000450032 677 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXC9P31274 AC104982.1-201ENST00000478775 574 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 UBA52P3-201ENST00000491303 382 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 PRELID3BP6-201ENST00000503839 571 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC069306.1-201ENST00000507006 843 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXC9P31274 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC9P31274 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC9P31274 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC090525.3-201ENST00000605601 189 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC9P31274 AC084824.4-201ENST00000620106 731 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC023510.2-201ENST00000622162 746 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC024023.1-201ENST00000624530 922 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC9P31274 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HOXC9P31274 AC083865.1-201ENST00000636634 831 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AC006927.2-201ENST00000639256 389 ntBASIC4.88□□□□□ -1.63
HOXC9P31274 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC9P31274 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC9P31274 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.87□□□□□ -1.63
HOXC9P31274 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC9P31274 LINC01109-201ENST00000603837 3081 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXC9P31274 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXC9P31274 RN7SKP74-201ENST00000362849 309 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 RNU1-33P-201ENST00000364249 162 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXC9P31274 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC9P31274 SFR1P2-201ENST00000421841 730 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC9P31274 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC9P31274 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC9P31274 AL591363.1-201ENST00000450091 483 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 BX510359.1-201ENST00000456973 237 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 RPS4XP12-201ENST00000461747 709 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 HMGB1P38-201ENST00000490557 577 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.87□□□□□ -1.63
HOXC9P31274 AC026784.1-201ENST00000507986 352 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC9P31274 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.87□□□□□ -1.63
HOXC9P31274 AC008083.2-201ENST00000546707 476 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 CYB5AP5-201ENST00000549779 389 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 AC107016.1-201ENST00000550463 337 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC9P31274 RN7SL622P-201ENST00000585292 275 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 AC124856.1-201ENST00000600819 896 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 AC133552.5-201ENST00000604266 540 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 AC006077.1-201ENST00000604746 343 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 AC099785.1-201ENST00000605697 437 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC9P31274 AP001005.3-201ENST00000622049 129 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 MIR3651-201ENST00000630427 90 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 OR4G3P-201ENST00000633500 913 ntBASIC4.87□□□□□ -1.63
HOXC9P31274 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC9P31274 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC9P31274 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC9P31274 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
HOXC9P31274 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms