Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-874P-201ENST00000362390 105 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RNA5SP188-201ENST00000362916 129 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RNU6-490P-201ENST00000362985 107 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RNA5SP350-201ENST00000363298 111 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RNU6-179P-201ENST00000363350 107 ntBASIC6.03□□□□□ -1.44
MSX1P28360 SNORD35A-201ENST00000363389 86 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RNU1-115P-201ENST00000365329 160 ntBASIC6.03□□□□□ -1.44
MSX1P28360 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 MRPS6P2-201ENST00000381143 370 ntBASIC6.03□□□□□ -1.44
MSX1P28360 Y_RNA.493-201ENST00000384422 102 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RNU1-46P-201ENST00000384425 164 ntBASIC6.03□□□□□ -1.44
MSX1P28360 Y_RNA.512-201ENST00000384518 102 ntBASIC6.03□□□□□ -1.44
MSX1P28360 NDUFS5P1-201ENST00000405668 289 ntBASIC6.03□□□□□ -1.44
MSX1P28360 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 ANAPC1P1-201ENST00000426186 2145 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 FTH1P1-201ENST00000437933 532 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 GAPDHP33-201ENST00000443168 1013 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RPL21P89-201ENST00000444021 467 ntBASIC6.03□□□□□ -1.44
MSX1P28360 CBX1P2-201ENST00000453841 458 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC021382.1-201ENST00000483523 359 ntBASIC6.03□□□□□ -1.44
MSX1P28360 FTH1P8-201ENST00000498161 514 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC020893.1-201ENST00000502452 580 ntBASIC6.03□□□□□ -1.44
MSX1P28360 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX1P28360 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 RNU6-699P-201ENST00000517081 110 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX1P28360 AC135001.1-201ENST00000544546 283 ntBASIC6.03□□□□□ -1.44
MSX1P28360 OR11H5P-201ENST00000554039 926 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC090615.1-201ENST00000577519 154 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC6.03□□□□□ -1.44
MSX1P28360 AC114477.1-201ENST00000605097 605 ntBASIC6.03□□□□□ -1.44
MSX1P28360 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX1P28360 AL138726.1-201ENST00000614873 333 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC137590.2-201ENST00000619709 240 ntBASIC6.03□□□□□ -1.44
MSX1P28360 AC073592.6-201ENST00000624271 415 ntBASIC6.03□□□□□ -1.44
MSX1P28360 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
MSX1P28360 AC062022.1-201ENST00000451026 1684 ntBASIC6.03□□□□□ -1.44
MSX1P28360 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
MSX1P28360 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX1P28360 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX1P28360 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 CASC19-228ENST00000641414 1684 ntBASIC6.02□□□□□ -1.45
MSX1P28360 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 RNA5SP258-201ENST00000362750 119 ntBASIC6.02□□□□□ -1.45
MSX1P28360 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
MSX1P28360 DSTNP4-201ENST00000399472 474 ntBASIC6.02□□□□□ -1.45
MSX1P28360 Z93019.1-201ENST00000416450 973 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 PRUNEP1-201ENST00000425846 705 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 AL031584.1-201ENST00000447169 754 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AC097359.1-201ENST00000447946 463 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AC144530.1-201ENST00000452862 555 ntBASIC6.02□□□□□ -1.45
MSX1P28360 RPS27P20-201ENST00000492051 246 ntBASIC6.02□□□□□ -1.45
MSX1P28360 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX1P28360 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX1P28360 RNU6-470P-201ENST00000515954 104 ntBASIC6.02□□□□□ -1.45
MSX1P28360 RNU2-53P-201ENST00000516257 147 ntBASIC6.02□□□□□ -1.45
MSX1P28360 IGLV3-6-201ENST00000523937 250 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AC005363.1-201ENST00000530779 351 ntBASIC6.02□□□□□ -1.45
MSX1P28360 TOMM20P1-201ENST00000534518 427 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX1P28360 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX1P28360 RN7SL208P-201ENST00000577964 296 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.02□□□□□ -1.45
MSX1P28360 AL513218.1-201ENST00000606527 391 ntBASIC6.02□□□□□ -1.45
MSX1P28360 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX1P28360 MIR6071-201ENST00000616741 78 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AP000843.1-201ENST00000624880 701 ntBASIC6.02□□□□□ -1.45
MSX1P28360 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 MIR1910-201ENST00000636955 80 ntBASIC6.02□□□□□ -1.45
MSX1P28360 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 AP000432.2-201ENST00000624164 2048 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms