Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
USF1P22415 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
USF1P22415 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.32□□□□□ -1.88
USF1P22415 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.31□□□□□ -1.88
USF1P22415 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.31□□□□□ -1.88
USF1P22415 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.31□□□□□ -1.88
USF1P22415 DCAF13P1-201ENST00000495256 1330 ntBASIC3.31□□□□□ -1.88
USF1P22415 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 Y_RNA.333-201ENST00000365274 102 ntBASIC3.31□□□□□ -1.88
USF1P22415 RNU1-89P-201ENST00000384592 164 ntBASIC3.31□□□□□ -1.88
USF1P22415 HMGB3P19-201ENST00000403971 560 ntBASIC3.31□□□□□ -1.88
USF1P22415 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 VTA1P1-201ENST00000414044 866 ntBASIC3.31□□□□□ -1.88
USF1P22415 Z97055.1-201ENST00000419730 712 ntBASIC3.31□□□□□ -1.88
USF1P22415 HIGD1AP4-201ENST00000430194 280 ntBASIC3.31□□□□□ -1.88
USF1P22415 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
USF1P22415 ARL5AP2-201ENST00000444698 533 ntBASIC3.31□□□□□ -1.88
USF1P22415 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 YWHAQP9-201ENST00000445891 512 ntBASIC3.31□□□□□ -1.88
USF1P22415 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 AC093663.2-201ENST00000484625 313 ntBASIC3.31□□□□□ -1.88
USF1P22415 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.31□□□□□ -1.88
USF1P22415 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 HMGN1P11-201ENST00000508668 303 ntBASIC3.31□□□□□ -1.88
USF1P22415 AC093853.1-201ENST00000515689 483 ntBASIC3.31□□□□□ -1.88
USF1P22415 AC008802.1-201ENST00000519121 791 ntBASIC3.31□□□□□ -1.88
USF1P22415 OR4C2P-201ENST00000530855 1064 ntBASIC3.31□□□□□ -1.88
USF1P22415 AP000619.3-201ENST00000535634 1127 ntBASIC3.31□□□□□ -1.88
USF1P22415 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.31□□□□□ -1.88
USF1P22415 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.31□□□□□ -1.88
USF1P22415 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.31□□□□□ -1.88
USF1P22415 LLPHP1-201ENST00000603571 367 ntBASIC3.31□□□□□ -1.88
USF1P22415 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 AC113194.1-201ENST00000606037 500 ntBASIC3.31□□□□□ -1.88
USF1P22415 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 AC100814.1-201ENST00000606963 623 ntBASIC3.31□□□□□ -1.88
USF1P22415 AC069200.1-201ENST00000609511 323 ntBASIC3.31□□□□□ -1.88
USF1P22415 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 AC019176.2-201ENST00000611579 315 ntBASIC3.31□□□□□ -1.88
USF1P22415 AL391261.4-201ENST00000616012 481 ntBASIC3.31□□□□□ -1.88
USF1P22415 MIR6864-201ENST00000617935 70 ntBASIC3.31□□□□□ -1.88
USF1P22415 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.31□□□□□ -1.88
USF1P22415 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
USF1P22415 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USF1P22415 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
USF1P22415 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USF1P22415 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
USF1P22415 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
USF1P22415 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USF1P22415 MIR208A-201ENST00000362287 71 ntBASIC3.3□□□□□ -1.88
USF1P22415 RNA5SP119-201ENST00000362715 117 ntBASIC3.3□□□□□ -1.88
USF1P22415 RNA5SP322-201ENST00000363617 119 ntBASIC3.3□□□□□ -1.88
USF1P22415 SNORA73.2-201ENST00000364946 201 ntBASIC3.3□□□□□ -1.88
USF1P22415 RNU6-761P-201ENST00000384148 107 ntBASIC3.3□□□□□ -1.88
USF1P22415 RNU6-883P-201ENST00000384597 107 ntBASIC3.3□□□□□ -1.88
USF1P22415 MIR153-1-201ENST00000384914 90 ntBASIC3.3□□□□□ -1.88
USF1P22415 MIR1251-201ENST00000408552 70 ntBASIC3.3□□□□□ -1.88
USF1P22415 MIR1303-201ENST00000408625 86 ntBASIC3.3□□□□□ -1.88
USF1P22415 CR848007.2-201ENST00000424918 787 ntBASIC3.3□□□□□ -1.88
USF1P22415 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
USF1P22415 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.3□□□□□ -1.88
USF1P22415 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.3□□□□□ -1.88
USF1P22415 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 CYCSP53-201ENST00000455540 265 ntBASIC3.3□□□□□ -1.88
USF1P22415 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.3□□□□□ -1.88
USF1P22415 AC005351.1-201ENST00000511152 786 ntBASIC3.3□□□□□ -1.88
USF1P22415 NDUFB4P9-201ENST00000511646 388 ntBASIC3.3□□□□□ -1.88
USF1P22415 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.3□□□□□ -1.88
USF1P22415 DUXAP2-201ENST00000519198 589 ntBASIC3.3□□□□□ -1.88
USF1P22415 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.3□□□□□ -1.88
USF1P22415 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.3□□□□□ -1.88
USF1P22415 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USF1P22415 AC090617.9-201ENST00000623751 147 ntBASIC3.3□□□□□ -1.88
USF1P22415 AC004943.3-201ENST00000624116 600 ntBASIC3.3□□□□□ -1.88
USF1P22415 AC020978.9-201ENST00000624380 1141 ntBASIC3.3□□□□□ -1.88
USF1P22415 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.3□□□□□ -1.88
USF1P22415 AL034408.1-202ENST00000636088 415 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms