Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 PPIAP15-201ENST00000479662 484 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 DUXAP5-201ENST00000529668 529 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 OR4A12P-201ENST00000530847 918 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 MTND3P12-201ENST00000559068 328 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC009712.1-201ENST00000564938 316 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC125494.3-201ENST00000602759 455 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL035411.2-201ENST00000604022 421 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC002487.1-201ENST00000604565 994 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC090525.3-201ENST00000605601 189 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL355493.4-201ENST00000618530 292 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC010975.3-201ENST00000618727 978 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 Z99129.2-201ENST00000619967 314 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AP000484.1-201ENST00000620067 1252 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL139089.1-201ENST00000620372 975 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC024595.1-201ENST00000623088 387 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 U6.107-201ENST00000637108 79 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC017104.5-201ENST00000637647 639 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 BX649567.1-201ENST00000642071 1134 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 RNU1-18P-201ENST00000363062 164 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 RNU6-353P-201ENST00000364266 108 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 RNU6-224P-201ENST00000384055 107 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 SNORD116-12-201ENST00000384468 92 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 MIR513B-201ENST00000385136 84 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 SOD2P1-201ENST00000396543 562 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC016769.2-201ENST00000414815 475 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 RPL22P18-201ENST00000417197 377 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 RPS3AP37-201ENST00000419176 745 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 MTND2P16-201ENST00000419987 799 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC005005.2-201ENST00000420779 380 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC104687.1-201ENST00000485829 412 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC110792.1-201ENST00000491826 472 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC004069.2-201ENST00000505438 1114 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 PRELID3BP4-201ENST00000515476 571 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 SCARNA14-201ENST00000516903 136 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC023538.1-201ENST00000534576 736 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 GAS5-AS1-201ENST00000602767 694 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 ELOCP35-201ENST00000604289 336 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AL137849.1-201ENST00000604767 169 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AL592436.1-201ENST00000605135 558 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 MIR6500-201ENST00000622700 86 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 AP002791.1-201ENST00000623291 381 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 RNA5SP196-201ENST00000625967 102 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 LINC00561-201ENST00000565815 2738 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX2Q9NPC8 NCAPGP1-201ENST00000505112 1814 ntBASIC4.14□□□□□ -1.75
SIX2Q9NPC8 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SIX2Q9NPC8 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SIX2Q9NPC8 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SIX2Q9NPC8 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.13□□□□□ -1.75
SIX2Q9NPC8 RNU4-68P-201ENST00000364314 141 ntBASIC4.13□□□□□ -1.75
SIX2Q9NPC8 SNORA62.2-201ENST00000364672 152 ntBASIC4.13□□□□□ -1.75
SIX2Q9NPC8 RNU4-28P-201ENST00000364739 141 ntBASIC4.13□□□□□ -1.75
SIX2Q9NPC8 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.13□□□□□ -1.75
SIX2Q9NPC8 RNU6-213P-201ENST00000384051 104 ntBASIC4.13□□□□□ -1.75
SIX2Q9NPC8 U1.1-201ENST00000384101 164 ntBASIC4.13□□□□□ -1.75
SIX2Q9NPC8 Y_RNA.472-201ENST00000384322 102 ntBASIC4.13□□□□□ -1.75
SIX2Q9NPC8 RNU6-549P-201ENST00000384433 107 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms