Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPS12P18-201ENST00000442381 270 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 RPL17P49-201ENST00000443728 411 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC009961.3-201ENST00000449832 765 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 CEACAMP6-201ENST00000452007 574 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC016687.1-201ENST00000482574 353 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 NCOR1P1-202ENST00000486162 291 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 RN7SL633P-201ENST00000488974 297 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AP002812.1-201ENST00000495378 474 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC122714.1-201ENST00000502510 459 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 NACAP5-201ENST00000509863 636 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 MEPE-206ENST00000511670 550 ntTSL 4 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 LDHBP3-201ENST00000514909 822 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC138701.1-201ENST00000524329 714 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC005000.1-201ENST00000536192 288 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 MTND2P17-201ENST00000550281 688 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC135626.1-201ENST00000556983 435 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 BDH2P1-201ENST00000602288 736 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AL049779.4-201ENST00000604500 156 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC004839.1-201ENST00000610269 501 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC126175.1-201ENST00000617041 758 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC091046.2-201ENST00000620775 665 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 MIR6500-201ENST00000622700 86 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 ZNF271P-202ENST00000465539 1970 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 ODF3-202ENST00000342593 386 ntTSL 5 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 RNA5SP119-201ENST00000362715 117 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 DEFA7P-201ENST00000382676 285 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 FO393413.1-201ENST00000402892 195 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 SNORA11.3-201ENST00000408471 128 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 RN7SKP293-201ENST00000411389 296 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AL590806.1-201ENST00000415818 853 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 MEAF6P1-201ENST00000416092 327 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 RPL21P112-201ENST00000434403 463 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC073901.1-201ENST00000462471 408 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC103975.1-201ENST00000482506 483 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC072052.1-201ENST00000496556 306 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 RPL23AP55-201ENST00000498163 452 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 PSMA2P2-201ENST00000504319 686 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 RPL7L1P13-201ENST00000511702 739 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC026412.2-201ENST00000512270 1075 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 SNORD46.2-201ENST00000516021 102 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC113191.1-201ENST00000517759 403 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 TBCA-206ENST00000518338 551 ntTSL 2 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 IGKV2D-10-201ENST00000520194 281 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 HMGB1P41-201ENST00000520234 440 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC060766.3-201ENST00000591442 263 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AL589674.2-201ENST00000604304 337 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC006023.2-201ENST00000609916 167 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 RNA5SP440-201ENST00000612665 119 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AL096712.1-201ENST00000614561 159 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 SNORA11.6-201ENST00000619030 128 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AC073429.2-201ENST00000569694 1444 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
LINC00643Q86TS7 OR56B2P-202ENST00000641377 2453 ntBASIC1.97□□□□□ -2.09
LINC00643Q86TS7 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC1.96□□□□□ -2.09
LINC00643Q86TS7 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC1.96□□□□□ -2.09
LINC00643Q86TS7 INTS6P1-201ENST00000504674 2530 ntBASIC1.96□□□□□ -2.09
LINC00643Q86TS7 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 ANKRD18EP-201ENST00000405487 2632 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms