Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA3P55318 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.6□□□□□ -1.99
FOXA3P55318 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA3P55318 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA3P55318 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC2.6□□□□□ -1.99
FOXA3P55318 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC2.6□□□□□ -1.99
FOXA3P55318 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA3P55318 AC120057.2-201ENST00000571520 271 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 MIR4277-201ENST00000578298 84 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 AC016877.3-201ENST00000606778 504 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 MIR6867-201ENST00000610636 67 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 MIR6500-201ENST00000622700 86 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 AP000346.3-201ENST00000622821 210 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA3P55318 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA3P55318 OR52H1-202ENST00000641796 1061 ntBASIC2.6□□□□□ -1.99
FOXA3P55318 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
FOXA3P55318 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA3P55318 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
FOXA3P55318 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA3P55318 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA3P55318 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 AC012618.3-205ENST00000637896 1496 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA3P55318 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC2.59□□□□□ -1.99
FOXA3P55318 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
FOXA3P55318 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 SNORA58B-201ENST00000364259 136 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 RNU6-213P-201ENST00000384051 104 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 RNU6-356P-201ENST00000384140 107 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 MIR607-201ENST00000385241 96 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 MIR323B-201ENST00000385269 82 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA3P55318 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA3P55318 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA3P55318 OR2AS1P-201ENST00000427827 319 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 HMGB1P12-201ENST00000438594 598 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA3P55318 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA3P55318 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA3P55318 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA3P55318 RPS27AP1-201ENST00000475545 471 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AC012181.1-201ENST00000479895 423 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 RPS4XP13-201ENST00000483219 789 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 OR5H3P-201ENST00000502817 919 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC2.59□□□□□ -1.99
FOXA3P55318 MTATP6P22-201ENST00000507369 598 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC2.59□□□□□ -1.99
FOXA3P55318 AC137768.1-201ENST00000549998 553 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA3P55318 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC2.59□□□□□ -1.99
FOXA3P55318 MIR5187-201ENST00000583479 76 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA3P55318 AL451074.6-201ENST00000608512 729 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 AC022079.2-201ENST00000619739 566 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA3P55318 AC092159.4-201ENST00000624944 550 ntBASIC2.59□□□□□ -1.99
FOXA3P55318 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA3P55318 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA3P55318 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
FOXA3P55318 AC110774.1-201ENST00000623567 2018 ntBASIC2.59□□□□□ -2
FOXA3P55318 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
FOXA3P55318 AL356274.2-201ENST00000624379 3752 ntBASIC2.58□□□□□ -2
FOXA3P55318 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC2.58□□□□□ -2
FOXA3P55318 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.58□□□□□ -2
FOXA3P55318 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.58□□□□□ -2
FOXA3P55318 RPL7P26-201ENST00000333817 754 ntBASIC2.58□□□□□ -2
FOXA3P55318 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
FOXA3P55318 RPL21P65-201ENST00000406094 466 ntBASIC2.58□□□□□ -2
FOXA3P55318 RN7SKP53-201ENST00000411337 315 ntBASIC2.58□□□□□ -2
FOXA3P55318 AC004022.2-201ENST00000413824 193 ntBASIC2.58□□□□□ -2
FOXA3P55318 AL356095.1-201ENST00000417217 199 ntBASIC2.58□□□□□ -2
FOXA3P55318 DPPA2P1-201ENST00000428060 556 ntBASIC2.58□□□□□ -2
FOXA3P55318 HMGB3P11-201ENST00000440127 604 ntBASIC2.58□□□□□ -2
FOXA3P55318 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 AC008264.1-201ENST00000447612 367 ntBASIC2.58□□□□□ -2
FOXA3P55318 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC2.58□□□□□ -2
FOXA3P55318 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 AC006483.1-201ENST00000487308 313 ntBASIC2.58□□□□□ -2
FOXA3P55318 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC2.58□□□□□ -2
FOXA3P55318 MGST2-204ENST00000506797 634 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 MTND4LP22-201ENST00000508209 276 ntBASIC2.58□□□□□ -2
FOXA3P55318 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.58□□□□□ -2
FOXA3P55318 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC2.58□□□□□ -2
FOXA3P55318 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC2.58□□□□□ -2
FOXA3P55318 SNORA31.9-201ENST00000516429 84 ntBASIC2.58□□□□□ -2
FOXA3P55318 AC245166.1-201ENST00000521012 253 ntBASIC2.58□□□□□ -2
FOXA3P55318 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC2.58□□□□□ -2
FOXA3P55318 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms