Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SEPT7P2-202ENST00000398921 823 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AL391417.1-201ENST00000404100 426 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AC126124.2-201ENST00000413542 321 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 ETF1P3-201ENST00000430422 1160 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AC140076.1-201ENST00000449897 361 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 RPL23AP71-201ENST00000470966 469 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AC087312.1-201ENST00000471411 480 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.22□□□□□ -1.73
COL18A1P39060 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.22□□□□□ -1.73
COL18A1P39060 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.22□□□□□ -1.73
COL18A1P39060 AC007998.5-201ENST00000622938 237 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.22□□□□□ -1.73
COL18A1P39060 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL18A1P39060 AC108206.1-201ENST00000570186 4159 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 NACAP7-201ENST00000407371 609 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AL356968.1-201ENST00000416622 474 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC4.22□□□□□ -1.73
COL18A1P39060 S100A11P1-201ENST00000477525 312 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.22□□□□□ -1.73
COL18A1P39060 MIR4727-201ENST00000622232 55 ntBASIC4.22□□□□□ -1.73
COL18A1P39060 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.22□□□□□ -1.73
COL18A1P39060 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.21□□□□□ -1.73
COL18A1P39060 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
COL18A1P39060 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL18A1P39060 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
COL18A1P39060 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL18A1P39060 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL18A1P39060 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
COL18A1P39060 AL160275.2-201ENST00000412010 394 ntBASIC4.21□□□□□ -1.74
COL18A1P39060 SETP5-201ENST00000437270 562 ntBASIC4.21□□□□□ -1.74
COL18A1P39060 RPS4XP13-201ENST00000483219 789 ntBASIC4.21□□□□□ -1.74
COL18A1P39060 RN7SKP116-201ENST00000516902 319 ntBASIC4.21□□□□□ -1.74
COL18A1P39060 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.21□□□□□ -1.74
COL18A1P39060 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.21□□□□□ -1.74
COL18A1P39060 LSM1P2-201ENST00000604911 322 ntBASIC4.21□□□□□ -1.74
COL18A1P39060 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL18A1P39060 AC125336.1-201ENST00000508893 2827 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 AC012078.1-201ENST00000405035 1646 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.2□□□□□ -1.74
COL18A1P39060 AC018529.3-201ENST00000624212 2254 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL18A1P39060 RNA5SP322-201ENST00000363617 119 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 RN7SKP220-201ENST00000410611 288 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.2□□□□□ -1.74
COL18A1P39060 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.2□□□□□ -1.74
COL18A1P39060 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.2□□□□□ -1.74
COL18A1P39060 AP000859.1-201ENST00000525536 307 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 AC245100.7-201ENST00000609678 442 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 AC079298.2-201ENST00000623885 459 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 AL451142.2-201ENST00000429076 2090 ntBASIC4.2□□□□□ -1.74
COL18A1P39060 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
COL18A1P39060 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL18A1P39060 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL18A1P39060 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
COL18A1P39060 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.2□□□□□ -1.74
COL18A1P39060 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL18A1P39060 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL18A1P39060 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.2□□□□□ -1.74
COL18A1P39060 AC012123.2-201ENST00000485809 248 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.19□□□□□ -1.74
COL18A1P39060 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.19□□□□□ -1.74
COL18A1P39060 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.19□□□□□ -1.74
COL18A1P39060 AC015917.1-201ENST00000579654 510 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 AC006363.1-201ENST00000603806 463 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 MIR622-201ENST00000638396 96 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL18A1P39060 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL18A1P39060 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 AC007496.3-201ENST00000624987 3443 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL18A1P39060 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 OR5J1P-201ENST00000313544 939 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 SNORA71.1-201ENST00000364523 117 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 NUP35P1-201ENST00000422734 947 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.19□□□□□ -1.74
COL18A1P39060 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.19□□□□□ -1.74
COL18A1P39060 DNAJC19P8-201ENST00000452887 259 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 AC021205.2-201ENST00000480069 347 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 AC004924.1-201ENST00000480160 781 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 RPS26P24-201ENST00000497656 331 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.19□□□□□ -1.74
COL18A1P39060 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 ATP1B3P1-201ENST00000605365 821 ntBASIC4.19□□□□□ -1.74
COL18A1P39060 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL18A1P39060 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL18A1P39060 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL18A1P39060 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC4.18□□□□□ -1.74
COL18A1P39060 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
COL18A1P39060 AC005183.1-201ENST00000603687 1979 ntBASIC4.18□□□□□ -1.74
COL18A1P39060 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
COL18A1P39060 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
COL18A1P39060 AC004552.1-201ENST00000419089 348 ntBASIC4.18□□□□□ -1.74
COL18A1P39060 OOSP1P1-201ENST00000423265 274 ntBASIC4.18□□□□□ -1.74
COL18A1P39060 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC4.18□□□□□ -1.74
COL18A1P39060 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.18□□□□□ -1.74
COL18A1P39060 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms