Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX1P28360 AC093816.1-201ENST00000515076 913 ntBASIC6.05□□□□□ -1.44
MSX1P28360 RNU6-408P-201ENST00000515910 100 ntBASIC6.05□□□□□ -1.44
MSX1P28360 RNU7-51P-201ENST00000516560 62 ntBASIC6.05□□□□□ -1.44
MSX1P28360 RNU6-789P-201ENST00000517105 102 ntBASIC6.05□□□□□ -1.44
MSX1P28360 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 IGHV3-57-201ENST00000520143 280 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC112191.2-201ENST00000522428 333 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX1P28360 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX1P28360 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC6.05□□□□□ -1.44
MSX1P28360 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 AC010424.2-201ENST00000607594 443 ntBASIC6.05□□□□□ -1.44
MSX1P28360 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 AC011155.2-201ENST00000623202 216 ntBASIC6.05□□□□□ -1.44
MSX1P28360 CYP3A51P-201ENST00000633513 256 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX1P28360 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.05□□□□□ -1.44
MSX1P28360 MAPK10-365ENST00000641902 3825 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AL596244.1-201ENST00000567068 3779 ntBASIC6.05□□□□□ -1.44
MSX1P28360 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 AC008957.3-201ENST00000624112 2242 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 AC107081.3-201ENST00000612715 2034 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
MSX1P28360 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 RNA5SP140-201ENST00000364524 92 ntBASIC6.04□□□□□ -1.44
MSX1P28360 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 AL031985.1-201ENST00000392713 418 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AL359643.1-201ENST00000404109 423 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AL024474.1-201ENST00000404655 591 ntBASIC6.04□□□□□ -1.44
MSX1P28360 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.04□□□□□ -1.44
MSX1P28360 SNAP23P1-201ENST00000433229 246 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX1P28360 RPL23AP89-201ENST00000439324 255 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 AC019185.1-201ENST00000442718 389 ntBASIC6.04□□□□□ -1.44
MSX1P28360 MTCO3P45-201ENST00000443036 613 ntBASIC6.04□□□□□ -1.44
MSX1P28360 MED28P3-201ENST00000444288 531 ntBASIC6.04□□□□□ -1.44
MSX1P28360 RPL23AP43-201ENST00000446445 471 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC011225.1-201ENST00000457751 369 ntBASIC6.04□□□□□ -1.44
MSX1P28360 snoU13.8-201ENST00000458890 104 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC104339.1-201ENST00000465478 348 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC092324.1-201ENST00000468671 324 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX1P28360 AC008526.1-201ENST00000509149 338 ntBASIC6.04□□□□□ -1.44
MSX1P28360 RNU2-10P-201ENST00000516375 211 ntBASIC6.04□□□□□ -1.44
MSX1P28360 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC005519.1-201ENST00000554490 601 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX1P28360 AC090651.1-201ENST00000567865 634 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX1P28360 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX1P28360 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX1P28360 RPL29P33-201ENST00000587474 316 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX1P28360 RPL23AP92-201ENST00000603609 255 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AC012368.3-201ENST00000604190 219 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AL355365.1-201ENST00000616480 294 ntBASIC6.04□□□□□ -1.44
MSX1P28360 MIR6861-201ENST00000618657 64 ntBASIC6.04□□□□□ -1.44
MSX1P28360 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX1P28360 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC6.04□□□□□ -1.44
MSX1P28360 AC243312.2-201ENST00000623340 601 ntBASIC6.04□□□□□ -1.44
MSX1P28360 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.04□□□□□ -1.44
MSX1P28360 TTC41P-205ENST00000551270 3963 ntBASIC6.04□□□□□ -1.44
MSX1P28360 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX1P28360 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.04□□□□□ -1.44
MSX1P28360 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 AC005618.1-201ENST00000606901 3148 ntBASIC6.04□□□□□ -1.44
MSX1P28360 AL139384.2-201ENST00000613809 3590 ntBASIC6.04□□□□□ -1.44
MSX1P28360 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX1P28360 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX1P28360 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.03□□□□□ -1.44
MSX1P28360 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
MSX1P28360 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX1P28360 AC016583.1-201ENST00000624221 2431 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms