Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC005345.1-201ENST00000431868 217 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.69□□□□□ -1.66
BDNFP23560 AC091390.1-201ENST00000433904 331 ntBASIC4.69□□□□□ -1.66
BDNFP23560 VDAC1P3-201ENST00000434069 851 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AC239367.2-201ENST00000447309 705 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AL445433.1-201ENST00000457507 257 ntBASIC4.69□□□□□ -1.66
BDNFP23560 CYCSP34-201ENST00000458172 304 ntBASIC4.69□□□□□ -1.66
BDNFP23560 RN7SL385P-201ENST00000468873 276 ntBASIC4.69□□□□□ -1.66
BDNFP23560 VPS26AP1-201ENST00000483197 979 ntBASIC4.69□□□□□ -1.66
BDNFP23560 MTCO3P35-201ENST00000485582 781 ntBASIC4.69□□□□□ -1.66
BDNFP23560 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.69□□□□□ -1.66
BDNFP23560 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.69□□□□□ -1.66
BDNFP23560 MTCO3P44-201ENST00000510977 541 ntBASIC4.69□□□□□ -1.66
BDNFP23560 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 RNA5SP446-201ENST00000515955 82 ntBASIC4.69□□□□□ -1.66
BDNFP23560 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.69□□□□□ -1.66
BDNFP23560 MIR4697-201ENST00000582977 78 ntBASIC4.69□□□□□ -1.66
BDNFP23560 KPNA2P3-201ENST00000584190 848 ntBASIC4.69□□□□□ -1.66
BDNFP23560 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC4.69□□□□□ -1.66
BDNFP23560 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
BDNFP23560 AC091979.2-201ENST00000607514 214 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AP005137.2-201ENST00000609238 400 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AC007275.1-201ENST00000621243 671 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AC091905.2-201ENST00000623143 306 ntBASIC4.69□□□□□ -1.66
BDNFP23560 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.69□□□□□ -1.66
BDNFP23560 MIR6830-201ENST00000636015 70 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AC011266.1-201ENST00000624119 3569 ntBASIC4.69□□□□□ -1.66
BDNFP23560 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.69□□□□□ -1.66
BDNFP23560 MFSD8-242ENST00000641690 4199 ntBASIC4.68□□□□□ -1.66
BDNFP23560 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
BDNFP23560 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
BDNFP23560 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.68□□□□□ -1.66
BDNFP23560 MIR921-201ENST00000401133 56 ntBASIC4.68□□□□□ -1.66
BDNFP23560 MTND4LP20-201ENST00000402379 270 ntBASIC4.68□□□□□ -1.66
BDNFP23560 RPS20P14-201ENST00000412545 360 ntBASIC4.68□□□□□ -1.66
BDNFP23560 FCF1P2-201ENST00000415284 583 ntBASIC4.68□□□□□ -1.66
BDNFP23560 RPS7P15-201ENST00000415804 584 ntBASIC4.68□□□□□ -1.66
BDNFP23560 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.68□□□□□ -1.66
BDNFP23560 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.68□□□□□ -1.66
BDNFP23560 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.68□□□□□ -1.66
BDNFP23560 MTCO1P48-201ENST00000448024 1096 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 MRPL42P4-201ENST00000453267 443 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.68□□□□□ -1.66
BDNFP23560 AC244505.3-201ENST00000454598 187 ntBASIC4.68□□□□□ -1.66
BDNFP23560 RN7SL303P-201ENST00000469773 251 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AC109327.1-201ENST00000471666 403 ntBASIC4.68□□□□□ -1.66
BDNFP23560 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 RN7SKP46-201ENST00000515942 234 ntBASIC4.68□□□□□ -1.66
BDNFP23560 RNU6-1073P-201ENST00000517182 106 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.68□□□□□ -1.66
BDNFP23560 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.68□□□□□ -1.66
BDNFP23560 OR4A12P-201ENST00000530847 918 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AP001317.1-201ENST00000531194 960 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.68□□□□□ -1.66
BDNFP23560 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.68□□□□□ -1.66
BDNFP23560 AC023575.1-201ENST00000580510 358 ntBASIC4.68□□□□□ -1.66
BDNFP23560 DNAJC19P3-201ENST00000594491 331 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AC005962.2-201ENST00000611427 652 ntBASIC4.68□□□□□ -1.66
BDNFP23560 AC114781.5-201ENST00000615297 108 ntBASIC4.68□□□□□ -1.66
BDNFP23560 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.68□□□□□ -1.66
BDNFP23560 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
BDNFP23560 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.67□□□□□ -1.66
BDNFP23560 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
BDNFP23560 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
BDNFP23560 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
BDNFP23560 MIR3065-201ENST00000390137 79 ntBASIC4.67□□□□□ -1.66
BDNFP23560 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
BDNFP23560 AL049693.1-201ENST00000402760 611 ntBASIC4.67□□□□□ -1.66
BDNFP23560 AL024474.1-201ENST00000404655 591 ntBASIC4.67□□□□□ -1.66
BDNFP23560 RNU4-78P-201ENST00000410940 126 ntBASIC4.67□□□□□ -1.66
BDNFP23560 AC011933.1-201ENST00000413334 321 ntBASIC4.67□□□□□ -1.66
BDNFP23560 DPRXP1-201ENST00000426312 460 ntBASIC4.67□□□□□ -1.66
BDNFP23560 AC092634.2-201ENST00000428146 1010 ntBASIC4.67□□□□□ -1.66
BDNFP23560 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.67□□□□□ -1.66
BDNFP23560 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.67□□□□□ -1.66
BDNFP23560 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.67□□□□□ -1.66
BDNFP23560 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.67□□□□□ -1.66
BDNFP23560 RPS3AP54-201ENST00000435535 734 ntBASIC4.67□□□□□ -1.66
BDNFP23560 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.67□□□□□ -1.66
BDNFP23560 UBE2V1P3-201ENST00000439651 417 ntBASIC4.67□□□□□ -1.66
BDNFP23560 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.67□□□□□ -1.66
BDNFP23560 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
BDNFP23560 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.67□□□□□ -1.66
BDNFP23560 AC116533.1-201ENST00000459748 321 ntBASIC4.67□□□□□ -1.66
BDNFP23560 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.67□□□□□ -1.66
BDNFP23560 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.67□□□□□ -1.66
BDNFP23560 DYNLL1P6-201ENST00000503440 264 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms