Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.3□□□□□ -1.88
COL6A3P12111 SYT14P1-202ENST00000600441 1448 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 Y_RNA.338-201ENST00000365320 114 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 AL356968.1-201ENST00000416622 474 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.3□□□□□ -1.88
COL6A3P12111 MIR8070-201ENST00000616510 88 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
COL6A3P12111 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC3.3□□□□□ -1.88
COL6A3P12111 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
COL6A3P12111 MIR34A-201ENST00000385130 110 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 MIR9-1-201ENST00000385198 89 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 HMGB3P20-201ENST00000417997 600 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.3□□□□□ -1.88
COL6A3P12111 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.3□□□□□ -1.88
COL6A3P12111 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC3.3□□□□□ -1.88
COL6A3P12111 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC3.29□□□□□ -1.88
COL6A3P12111 BCORP1-203ENST00000513194 5093 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.29□□□□□ -1.88
COL6A3P12111 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.29□□□□□ -1.88
COL6A3P12111 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.29□□□□□ -1.88
COL6A3P12111 RN7SKP283-201ENST00000517197 270 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.29□□□□□ -1.88
COL6A3P12111 TRAV37-201ENST00000553906 342 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.29□□□□□ -1.88
COL6A3P12111 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.29□□□□□ -1.88
COL6A3P12111 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 AC004014.2-201ENST00000623718 5122 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 OR1S2-201ENST00000302592 978 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 SNORD67-201ENST00000390833 111 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 U3.42-201ENST00000408746 214 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 AC011742.1-201ENST00000431448 434 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 OR4G2P-202ENST00000641004 1759 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.29□□□□□ -1.88
COL6A3P12111 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 AC104623.2-202ENST00000623477 4002 ntBASIC3.29□□□□□ -1.88
COL6A3P12111 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A3P12111 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.29□□□□□ -1.88
COL6A3P12111 HMGB3P12-201ENST00000438745 556 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC114967.1-201ENST00000504890 259 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.28□□□□□ -1.88
COL6A3P12111 AC027176.1-201ENST00000560204 514 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC3.28□□□□□ -1.88
COL6A3P12111 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.28□□□□□ -1.88
COL6A3P12111 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.28□□□□□ -1.88
COL6A3P12111 AC069285.2-201ENST00000440210 275 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.28□□□□□ -1.88
COL6A3P12111 RNA5SP103-201ENST00000459503 118 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC117440.1-201ENST00000474107 571 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC100770.1-201ENST00000532310 322 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL6A3P12111 U3.23-201ENST00000391132 200 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
COL6A3P12111 RN7SKP210-201ENST00000459176 261 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.28□□□□□ -1.88
COL6A3P12111 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.28□□□□□ -1.88
COL6A3P12111 IGKV2-36-201ENST00000519999 223 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.28□□□□□ -1.88
COL6A3P12111 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.28□□□□□ -1.88
COL6A3P12111 SLC25A36P1-201ENST00000590111 465 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 PISRT1-201ENST00000626175 531 ntBASIC3.28□□□□□ -1.88
COL6A3P12111 UBE3AP2-201ENST00000429033 2259 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
COL6A3P12111 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 MIR499A-201ENST00000384903 122 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.27□□□□□ -1.89
COL6A3P12111 MTCYBP14-201ENST00000457471 715 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 AL049874.4-201ENST00000557593 255 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 MIR4498-201ENST00000577599 66 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.27□□□□□ -1.89
COL6A3P12111 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms